Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY25697 | Canola | cytosol | 95.52 | 98.46 |
| AT3G56340.1 | Thale cress | cytosol | 91.04 | 93.85 |
| CDY27223 | Canola | cytosol, mitochondrion | 96.27 | 93.48 |
| CDX67642 | Canola | cytosol | 92.54 | 92.54 |
| CDY68398 | Canola | cytosol | 92.54 | 92.54 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 79.1 | 85.48 |
| KRH17252 | Soybean | nucleus | 79.1 | 81.54 |
| KRH64187 | Soybean | nucleus | 78.36 | 81.4 |
| KRH72901 | Soybean | nucleus | 78.36 | 80.77 |
| KRH57998 | Soybean | nucleus | 77.61 | 80.62 |
| KRH53763 | Soybean | nucleus | 77.61 | 80.62 |
| KRH04512 | Soybean | nucleus | 77.61 | 80.62 |
| Solyc06g007470.2.1 | Tomato | nucleus | 76.12 | 80.31 |
| PGSC0003DMT400053000 | Potato | cytosol | 76.12 | 80.31 |
| Solyc04g008810.2.1 | Tomato | nucleus | 75.37 | 78.91 |
| PGSC0003DMT400065105 | Potato | cytosol | 75.37 | 78.91 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 76.87 | 75.18 |
| PGSC0003DMT400059492 | Potato | cytosol | 58.21 | 74.29 |
| CDY24898 | Canola | cytosol, plastid | 91.04 | 73.94 |
| CDY07599 | Canola | plastid | 91.04 | 73.94 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 72.39 | 73.48 |
| CDY50450 | Canola | mitochondrion | 95.52 | 72.32 |
| Os01t0823300-00 | Rice | nucleus | 70.15 | 70.68 |
| CDX75988 | Canola | cytosol | 93.28 | 70.62 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 77.61 | 69.33 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 55.22 | 69.16 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 69.4 | 68.89 |
| KRH06932 | Soybean | cytosol | 54.48 | 68.87 |
| CDY06976 | Canola | cytosol | 89.55 | 68.57 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 74.63 | 68.03 |
| Os05t0477300-03 | Rice | nucleus, plastid | 68.66 | 67.65 |
| TraesCS5A01G469300.1 | Wheat | golgi | 70.15 | 67.63 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 77.61 | 66.24 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 71.64 | 65.75 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 70.15 | 63.09 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 73.13 | 62.82 |
| OQU90753 | Sorghum | plastid | 72.39 | 61.78 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 62.69 | 61.76 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 60.45 | 57.04 |
| PGSC0003DMT400062735 | Potato | cytosol | 44.03 | 56.19 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 61.19 | 55.03 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 52.99 | 46.71 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 46.27 | 45.59 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 67.16 | 44.55 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 50.75 | 42.24 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 50.0 | 41.61 |
| Os03t0816200-01 | Rice | cytosol | 21.64 | 40.85 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 44.03 | 38.56 |
| CDX67643 | Canola | cytosol | 10.45 | 8.64 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:A0A078C5P3 | EnsemblPlants:CDX72145 | ProteinID:CDX72145 | ProteinID:CDX72145.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00155966001 | InterPro:IPR038551 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0004EE2C6D | SEG:seg |
Description
BnaC08g27290D
Coordinates
chrLK031795:+:2661933..2663052
Molecular Weight (calculated)
15011.3 Da
IEP (calculated)
11.650
GRAVY (calculated)
-0.855
Length
134 amino acids
Sequence
(BLAST)
(BLAST)
001: MASLPTFKRR NGGRNKHNRG HVNPIRCSNC GKCCPKDKAI KRFLVRNIVE QAAIRDVQEA SVYDGYTLPK LYAKMQYCVS CAIHSHVVRV RSRTNRRVRT
101: PPPRFARRKE DTPKPGQPGQ PPRPAGGAPA APRA
101: PPPRFARRKE DTPKPGQPGQ PPRPAGGAPA APRA
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.