Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | CDX71154 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | CDY02832 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | CDY32688 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | CDY61025 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX67642 | Canola | cytosol | 71.43 | 93.28 |
| CDY68398 | Canola | cytosol | 71.43 | 93.28 |
| AT2G40590.1 | Thale cress | cytosol | 69.71 | 93.13 |
| AT2G40510.1 | Thale cress | cytosol | 69.71 | 91.73 |
| CDY25697 | Canola | cytosol | 68.0 | 91.54 |
| CDX72145 | Canola | cytosol | 68.57 | 89.55 |
| CDY27223 | Canola | cytosol, mitochondrion | 69.14 | 87.68 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 60.57 | 85.48 |
| KRH64187 | Soybean | nucleus | 60.57 | 82.17 |
| KRH04512 | Soybean | nucleus | 60.57 | 82.17 |
| CDY24898 | Canola | cytosol, plastid | 77.14 | 81.82 |
| KRH72901 | Soybean | nucleus | 60.57 | 81.54 |
| KRH17252 | Soybean | nucleus | 60.57 | 81.54 |
| KRH57998 | Soybean | nucleus | 60.0 | 81.4 |
| KRH53763 | Soybean | nucleus | 60.0 | 81.4 |
| CDY07599 | Canola | plastid | 76.0 | 80.61 |
| PGSC0003DMT400053000 | Potato | cytosol | 57.71 | 79.53 |
| Solyc06g007470.2.1 | Tomato | nucleus | 57.71 | 79.53 |
| PGSC0003DMT400065105 | Potato | cytosol | 57.71 | 78.91 |
| Solyc04g008810.2.1 | Tomato | nucleus | 57.71 | 78.91 |
| PGSC0003DMT400059492 | Potato | cytosol | 44.0 | 73.33 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 57.14 | 72.99 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 61.71 | 72.0 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 54.29 | 71.97 |
| Os01t0823300-00 | Rice | nucleus | 54.29 | 71.43 |
| CDY50450 | Canola | mitochondrion | 72.0 | 71.19 |
| CDX75988 | Canola | cytosol | 72.0 | 71.19 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 42.86 | 70.09 |
| KRH06932 | Soybean | cytosol | 41.71 | 68.87 |
| Os05t0477300-03 | Rice | nucleus, plastid | 53.14 | 68.38 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 52.57 | 68.15 |
| TraesCS5A01G469300.1 | Wheat | golgi | 52.57 | 66.19 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 54.86 | 65.31 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 53.71 | 64.38 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 57.71 | 64.33 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 53.71 | 63.09 |
| OQU90753 | Sorghum | plastid | 56.0 | 62.42 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 48.0 | 61.76 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 54.29 | 60.9 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 47.43 | 58.45 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 48.0 | 56.38 |
| PGSC0003DMT400062735 | Potato | cytosol | 32.57 | 54.29 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 41.71 | 48.03 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 36.57 | 47.06 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 51.43 | 44.55 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 40.0 | 43.48 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 39.43 | 42.86 |
| Os03t0816200-01 | Rice | cytosol | 16.57 | 40.85 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 32.57 | 37.25 |
| CDX67643 | Canola | cytosol | 8.57 | 9.26 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:A0A078F0R2 | EnsemblPlants:CDY06976 | ProteinID:CDY06976 | ProteinID:CDY06976.1 |
| GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 |
| GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00123282001 | InterPro:IPR038551 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0004EDDEFD | SEG:seg |
Description
BnaA04g23390D
Coordinates
chrLK031974:+:455725..457325
Molecular Weight (calculated)
19789.1 Da
IEP (calculated)
11.864
GRAVY (calculated)
-0.874
Length
175 amino acids
Sequence
(BLAST)
(BLAST)
001: MNFNNKKKTR GKMIGFVVRK RVNPSSSFSA HEEKRSQPRI IKDGIFTFKR RNGGRNKHNR GHVKPIRCSN CGKCCPKDKA IKRFIVRNIV EQAAIRDVQE
101: ASVYDGYTLP KLYAKTQYCV SCAIHSHVVR VRSRTNRRVR TPPPRFVRRK EDAPKPGQPG QAPRPAGAGA AAPRA
101: ASVYDGYTLP KLYAKTQYCV SCAIHSHVVR VRSRTNRRVR TPPPRFVRRK EDAPKPGQPG QAPRPAGAGA AAPRA
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.