Factsheet for TraesCS5B01G481800.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 25769308
unclear: 25769308
nucleus: 26228564

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT2G40590.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT2G40590.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G469300.1	Wheat	golgi	82.69	92.81
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	76.92	90.91
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	82.69	88.36
VIT_06s0004g07940.t01	Wine grape	cytosol	62.18	78.23
KRH17252	Soybean	nucleus	64.74	77.69
KRH72901	Soybean	nucleus	64.74	77.69
KRH53763	Soybean	nucleus	64.1	77.52
KRH64187	Soybean	nucleus	64.1	77.52
KRH57998	Soybean	nucleus	63.46	76.74
Solyc06g007470.2.1	Tomato	nucleus	62.18	76.38
PGSC0003DMT400053000	Potato	cytosol	62.18	76.38
KRH04512	Soybean	nucleus	62.82	75.97
CDY25697	Canola	cytosol	62.82	75.38
OQU90753	Sorghum	plastid	75.64	75.16
PGSC0003DMT400065105	Potato	cytosol	61.54	75.0
Solyc04g008810.2.1	Tomato	nucleus	61.54	75.0
AT3G56340.1	Thale cress	cytosol	61.54	73.85
AT2G40590.1	Thale cress	cytosol	61.54	73.28
CDX72145	Canola	cytosol	62.82	73.13
Bra007238.1-P	Field mustard	cytosol	62.18	72.39
AT2G40510.1	Thale cress	cytosol	61.54	72.18
CDY68398	Canola	cytosol	61.54	71.64
CDX67642	Canola	cytosol	61.54	71.64
GSMUA_Achr3P17860_001	Banana	mitochondrion	62.82	71.53
CDY27223	Canola	cytosol, mitochondrion	62.18	70.29
PGSC0003DMT400059492	Potato	cytosol	46.79	69.52
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	62.82	66.67
VIT_13s0067g02700.t01	Wine grape	plastid	62.18	64.67
GSMUA_Achr6P23430_001	Banana	plastid	64.1	63.69
Bra014697.1-P	Field mustard	cytosol	61.54	62.75
KRH06932	Soybean	cytosol	42.31	62.26
GSMUA_Achr6P15550_001	Banana	cytosol	53.21	61.03
Os03t0816200-01	Rice	cytosol	26.92	59.15
CDY24898	Canola	cytosol, plastid	62.18	58.79
CDY07599	Canola	plastid	62.18	58.79
CDY50450	Canola	mitochondrion	62.18	54.8
CDY06976	Canola	cytosol	60.9	54.29
CDX75988	Canola	cytosol	61.54	54.24
PGSC0003DMT400062735	Potato	cytosol	35.26	52.38
TraesCS3B01G377000.1	Wheat	nucleus	49.36	50.66
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	60.9	33.45

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038551	PFAM:PF01283
ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	EnsemblPlantsGene:TraesCS5B01G481800
EnsemblPlants:TraesCS5B01G481800.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5B:+:654749522..654751425

Molecular Weight (calculated)

16540.0 Da

IEP (calculated)

11.598

GRAVY (calculated)

-0.662

Length

156 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVHD GYVLPKLYAK VHHCVSCAIH AHIVRVRSRE NRRNREPPQR
101: FRRRDDGPRP GQGGPPRAGG PGAPGGAPAG AGAVPGAPGG APAGAGAVPG APAPRV

Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA

Arabidopsis Description

RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.