Factsheet for TraesCS5A01G469300.1

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 1
mitochondrion 1
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, nucleus, plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	nucleus

golgi: 23128297
golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms, gfp PMID: 23128297 doi

M Suliman, AL Chateigner-Boutin, M Francin-Allami, A Partier, B Bouchet, J Salse, C Pont, J Marion, H Rogniaux, D Tessier, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G150300.2
TraesCS3B01G177300.1
TraesCS3D01G158200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	TraesCS3A01G150300.2	AT5G58720.1	21798944
AT2G40590.1	TraesCS3B01G177300.1	AT5G58720.1	21798944
AT2G40590.1	TraesCS3D01G158200.1	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	98.56	93.84
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	84.17	88.64
TraesCS5B01G481800.1	Wheat	nucleus	92.81	82.69
VIT_06s0004g07940.t01	Wine grape	cytosol	67.63	75.81
KRH17252	Soybean	nucleus	70.5	75.38
KRH72901	Soybean	nucleus	69.78	74.62
KRH53763	Soybean	nucleus	69.06	74.42
KRH64187	Soybean	nucleus	69.06	74.42
KRH57998	Soybean	nucleus	68.35	73.64
OQU90753	Sorghum	plastid	82.73	73.25
Solyc06g007470.2.1	Tomato	nucleus	66.91	73.23
PGSC0003DMT400053000	Potato	cytosol	66.91	73.23
KRH04512	Soybean	nucleus	67.63	72.87
CDY25697	Canola	cytosol	67.63	72.31
PGSC0003DMT400065105	Potato	cytosol	66.19	71.88
Solyc04g008810.2.1	Tomato	nucleus	66.19	71.88
AT3G56340.1	Thale cress	cytosol	66.91	71.54
AT2G40590.1	Thale cress	cytosol	66.91	70.99
CDY68398	Canola	cytosol	67.63	70.15
CDX72145	Canola	cytosol	67.63	70.15
CDX67642	Canola	cytosol	67.63	70.15
Bra007238.1-P	Field mustard	cytosol	67.63	70.15
AT2G40510.1	Thale cress	cytosol	66.91	69.92
PGSC0003DMT400059492	Potato	cytosol	52.52	69.52
GSMUA_Achr3P17860_001	Banana	mitochondrion	67.63	68.61
CDY27223	Canola	cytosol, mitochondrion	67.63	68.12
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	67.63	63.95
VIT_13s0067g02700.t01	Wine grape	plastid	67.63	62.67
GSMUA_Achr6P23430_001	Banana	plastid	69.06	61.15
Bra014697.1-P	Field mustard	cytosol	66.91	60.78
Os03t0816200-01	Rice	cytosol	30.94	60.56
TraesCS3A01G344900.1	Wheat	cytosol	64.75	60.4
KRH06932	Soybean	cytosol	46.04	60.38
GSMUA_Achr6P15550_001	Banana	cytosol	58.99	60.29
CDY24898	Canola	cytosol, plastid	67.63	56.97
CDY07599	Canola	plastid	67.63	56.97
CDY50450	Canola	mitochondrion	67.63	53.11
CDY06976	Canola	cytosol	66.19	52.57
CDX75988	Canola	cytosol	66.91	52.54
PGSC0003DMT400062735	Potato	cytosol	38.13	50.48
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	66.19	32.39

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR038551	PFAM:PF01283
ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	EnsemblPlantsGene:TraesCS5A01G469300
EnsemblPlants:TraesCS5A01G469300.1	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr5A:+:646347812..646349667

Molecular Weight (calculated)

15283.6 Da

IEP (calculated)

11.598

GRAVY (calculated)

-0.787

Length

139 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKY IRCSNCAKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVHD GYVLPKLYAK VHHCVSCAIH AHIVRVRSRE NRRNREPPQR
101: FRRRDDGPRP GQGGPPRAGG PGGAPAGAGA VPGAPAPRV

Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA

Arabidopsis Description

RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.