CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 2
vacuole 1
cytosol 2
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG98291
KRH30312

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	KRG98291	AT5G58720.1	21798944
AT2G40590.1	KRH30312	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH53763	Soybean	nucleus	99.22	99.22
KRH57998	Soybean	nucleus	96.12	96.12
KRH17252	Soybean	nucleus	95.35	94.62
KRH72901	Soybean	nucleus	95.35	94.62
KRH04512	Soybean	nucleus	94.57	94.57
VIT_06s0004g07940.t01	Wine grape	cytosol	86.82	90.32
Solyc04g008810.2.1	Tomato	nucleus	85.27	85.94
PGSC0003DMT400065105	Potato	cytosol	85.27	85.94
Solyc06g007470.2.1	Tomato	nucleus	84.5	85.83
PGSC0003DMT400053000	Potato	cytosol	84.5	85.83
AT3G56340.1	Thale cress	cytosol	82.95	82.31
AT2G40590.1	Thale cress	cytosol	82.17	80.92
CDY25697	Canola	cytosol	81.4	80.77
AT2G40510.1	Thale cress	cytosol	82.17	79.7
CDY68398	Canola	cytosol	82.17	79.1
CDX67642	Canola	cytosol	82.17	79.1
Bra007238.1-P	Field mustard	cytosol	82.17	79.1
GSMUA_Achr3P17860_001	Banana	mitochondrion	83.72	78.83
CDX72145	Canola	cytosol	81.4	78.36
PGSC0003DMT400059492	Potato	cytosol	63.57	78.1
CDY27223	Canola	cytosol, mitochondrion	82.17	76.81
VIT_13s0067g02700.t01	Wine grape	plastid	87.6	75.33
KRH06932	Soybean	cytosol	61.24	74.53
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	75.97	74.24
HORVU3Hr1G081220.1	Barley	cytosol	59.69	71.96
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	81.4	71.43
Os01t0823300-00	Rice	nucleus	72.87	70.68
GSMUA_Achr6P23430_001	Banana	plastid	85.27	70.06
Bra014697.1-P	Field mustard	cytosol	82.17	69.28
TraesCS5A01G469300.1	Wheat	golgi	74.42	69.06
Os05t0477300-03	Rice	nucleus, plastid	72.09	68.38
EES19692	Sorghum	cytosol, nucleus, plastid	71.32	68.15
GSMUA_Achr6P15550_001	Banana	cytosol	70.54	66.91
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	75.19	66.44
CDY07599	Canola	plastid	82.95	64.85
CDY24898	Canola	cytosol, plastid	82.95	64.85
TraesCS5B01G481800.1	Wheat	nucleus	77.52	64.1
Zm00001d010614_P007	Maize	cytosol, mitochondrion, nucleus	73.64	63.76
OQU90753	Sorghum	plastid	75.97	62.42
CDY06976	Canola	cytosol	82.17	60.57
CDY50450	Canola	mitochondrion	82.95	60.45
CDX75988	Canola	cytosol	82.95	60.45
PGSC0003DMT400062735	Potato	cytosol	48.84	60.0
TraesCS3D01G338700.1	Wheat	cytosol	64.34	58.45
TraesCS3A01G344900.1	Wheat	cytosol	65.89	57.05
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	50.39	47.79
TraesCS3B01G377000.1	Wheat	nucleus	55.81	47.37
Zm00001d034609_P001	Maize	cytosol, nucleus, plasma membrane	72.09	46.04
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	52.71	42.24
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	51.94	41.61
Os03t0816200-01	Rice	cytosol	21.71	39.44
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	81.4	36.97
HORVU4Hr1G034100.2	Barley	cytosol	43.41	36.6

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	UniProt:A0A0R0KHW0	EMBL:ACUP02002746	EnsemblPlantsGene:GLYMA_04G221400	GO:GO:0003674
GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0019538	GO:GO:0030529	InterPro:IPR038551	EnsemblPlants:KRH64187	ProteinID:KRH64187	ProteinID:KRH64187.1
PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF6	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf
UniParc:UPI0001890CAF	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr4:+:49213914..49215871

Molecular Weight (calculated)

14813.1 Da

IEP (calculated)

11.489

GRAVY (calculated)

-0.851

Length

129 amino acids

Sequence
(BLAST)

001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACVYE QYTLPKLYVK MQYCVSCAIH SHVVRVRSRT DRRKREPPQR
101: FIRRRDDAPR PGQPGQAPRP AGVGAPARA

Best Arabidopsis Sequence Match ( AT2G40590.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V

Arabidopsis Description

RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.