Subcellular Localization
min:
: max
Winner_takes_all: plastid, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 1
- mitochondrion 1
- plastid 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G150300.2 | |
| TraesCS3B01G177300.1 | |
| TraesCS3D01G158200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | TraesCS3A01G150300.2 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | TraesCS3B01G177300.1 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | TraesCS3D01G158200.1 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 95.65 | 95.65 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 74.53 | 78.95 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 52.17 | 61.76 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 53.42 | 60.56 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 41.61 | 54.03 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 45.96 | 54.01 |
| KRH72901 | Soybean | nucleus | 43.48 | 53.85 |
| KRH17252 | Soybean | nucleus | 43.48 | 53.85 |
| CDY25697 | Canola | cytosol | 43.48 | 53.85 |
| Os01t0823300-00 | Rice | nucleus | 44.1 | 53.38 |
| KRH64187 | Soybean | nucleus | 42.24 | 52.71 |
| KRH53763 | Soybean | nucleus | 42.24 | 52.71 |
| KRH04512 | Soybean | nucleus | 42.24 | 52.71 |
| AT2G40590.1 | Thale cress | cytosol | 42.86 | 52.67 |
| KRH57998 | Soybean | nucleus | 41.61 | 51.94 |
| AT2G40510.1 | Thale cress | cytosol | 42.86 | 51.88 |
| AT3G56340.1 | Thale cress | cytosol | 41.61 | 51.54 |
| CDY68398 | Canola | cytosol | 42.86 | 51.49 |
| CDX67642 | Canola | cytosol | 42.86 | 51.49 |
| Solyc06g007470.2.1 | Tomato | nucleus | 40.37 | 51.18 |
| PGSC0003DMT400053000 | Potato | cytosol | 40.37 | 51.18 |
| Bra007238.1-P | Field mustard | cytosol | 42.24 | 50.75 |
| CDX72145 | Canola | cytosol | 42.24 | 50.75 |
| Solyc04g008810.2.1 | Tomato | nucleus | 39.75 | 50.0 |
| PGSC0003DMT400065105 | Potato | cytosol | 39.75 | 50.0 |
| CDY27223 | Canola | cytosol, mitochondrion | 42.24 | 49.28 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 44.72 | 48.98 |
| PGSC0003DMT400059492 | Potato | cytosol | 31.68 | 48.57 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 45.34 | 46.5 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 41.61 | 44.67 |
| Bra014697.1-P | Field mustard | cytosol | 42.24 | 44.44 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 36.02 | 42.65 |
| KRH06932 | Soybean | cytosol | 27.95 | 42.45 |
| CDY07599 | Canola | plastid | 43.48 | 42.42 |
| CDY24898 | Canola | cytosol, plastid | 43.48 | 42.42 |
| CDY06976 | Canola | cytosol | 43.48 | 40.0 |
| CDY50450 | Canola | mitochondrion | 42.86 | 38.98 |
| CDX75988 | Canola | cytosol | 42.24 | 38.42 |
| PGSC0003DMT400062735 | Potato | cytosol | 21.74 | 33.33 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 41.61 | 23.59 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR038551 | PFAM:PF01283 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF1 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | EnsemblPlantsGene:TraesCS3D01G338900 | EnsemblPlants:TraesCS3D01G338900.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:452172001..452173824
Molecular Weight (calculated)
16965.4 Da
IEP (calculated)
11.371
GRAVY (calculated)
-0.773
Length
161 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVRF IRCDNCAKTV PKDKAIKRYK VQNIVAPENI SYFTEASVLD GYHLPKIYIK ERWCIGCAIH KKKIGIRSRK DRKNRAPPES
101: VRRRGPRPEG QAPRPGGVGG GPGGVGGGSG GTGGGFGAGG AGGGLGAGAP APNVAGDWPQ N
101: VRRRGPRPEG QAPRPGGVGG GPGGVGGGSG GTGGGFGAGG AGGGLGAGAP APNVAGDWPQ N
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
Arabidopsis Description
RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.