Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- plastid 4
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr7P14310_001 | |
| GSMUA_Achr7P14320_001 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | GSMUA_Achr7P14310_001 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | GSMUA_Achr7P14320_001 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 77.07 | 88.32 |
| PGSC0003DMT400053000 | Potato | cytosol | 70.7 | 87.4 |
| Solyc06g007470.2.1 | Tomato | nucleus | 70.7 | 87.4 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 68.79 | 87.1 |
| KRH17252 | Soybean | nucleus | 71.34 | 86.15 |
| Solyc04g008810.2.1 | Tomato | nucleus | 70.06 | 85.94 |
| PGSC0003DMT400065105 | Potato | cytosol | 70.06 | 85.94 |
| KRH72901 | Soybean | nucleus | 70.7 | 85.38 |
| KRH64187 | Soybean | nucleus | 70.06 | 85.27 |
| KRH57998 | Soybean | nucleus | 70.06 | 85.27 |
| KRH53763 | Soybean | nucleus | 70.06 | 85.27 |
| KRH04512 | Soybean | nucleus | 68.79 | 83.72 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 78.34 | 83.67 |
| CDY25697 | Canola | cytosol | 65.61 | 79.23 |
| PGSC0003DMT400059492 | Potato | cytosol | 52.87 | 79.05 |
| Bra007238.1-P | Field mustard | cytosol | 66.24 | 77.61 |
| CDX72145 | Canola | cytosol | 66.24 | 77.61 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 64.97 | 77.27 |
| AT2G40590.1 | Thale cress | cytosol | 64.33 | 77.1 |
| AT3G56340.1 | Thale cress | cytosol | 63.69 | 76.92 |
| AT2G40510.1 | Thale cress | cytosol | 64.33 | 75.94 |
| CDY27223 | Canola | cytosol, mitochondrion | 65.61 | 74.64 |
| CDX67642 | Canola | cytosol | 63.06 | 73.88 |
| CDY68398 | Canola | cytosol | 63.06 | 73.88 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 63.06 | 72.79 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 69.43 | 72.67 |
| KRH06932 | Soybean | cytosol | 48.41 | 71.7 |
| Os01t0823300-00 | Rice | nucleus | 59.24 | 69.92 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 47.13 | 69.16 |
| TraesCS5A01G469300.1 | Wheat | golgi | 61.15 | 69.06 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 59.24 | 68.89 |
| Bra014697.1-P | Field mustard | cytosol | 65.61 | 67.32 |
| OQU90753 | Sorghum | plastid | 66.24 | 66.24 |
| Os05t0477300-03 | Rice | nucleus, plastid | 57.32 | 66.18 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 61.15 | 65.75 |
| CDY24898 | Canola | cytosol, plastid | 67.52 | 64.24 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 63.69 | 64.1 |
| PGSC0003DMT400062735 | Potato | cytosol | 42.68 | 63.81 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 59.87 | 63.09 |
| CDY07599 | Canola | plastid | 66.24 | 63.03 |
| CDY50450 | Canola | mitochondrion | 66.24 | 58.76 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 52.87 | 58.45 |
| CDX75988 | Canola | cytosol | 65.61 | 58.19 |
| CDY06976 | Canola | cytosol | 64.33 | 57.71 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 52.87 | 55.7 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 44.59 | 51.47 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 47.77 | 49.34 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 46.5 | 45.34 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 57.96 | 45.05 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 45.22 | 44.1 |
| Os03t0816200-01 | Rice | cytosol | 19.75 | 43.66 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 37.58 | 38.56 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 62.42 | 34.51 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 | EnsemblPlantsGene:GSMUA_Achr6G23430_001 |
| EnsemblPlants:GSMUA_Achr6P23430_001 | EnsemblPlants:GSMUA_Achr6T23430_001 | InterPro:IPR038551 | UniProt:M0T9J1 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI000295B615 | SEG:seg |
Description
40S ribosomal protein S26-1 [Source:GMGC_GENE;Acc:GSMUA_Achr6G23430_001]
Coordinates
chr6:-:23607876..23610651
Molecular Weight (calculated)
18030.8 Da
IEP (calculated)
11.306
GRAVY (calculated)
-0.834
Length
157 amino acids
Sequence
(BLAST)
(BLAST)
001: MSTRQHYIFS PPCDVARLAF SQTLTRSEWA ATMTFKRRNG GRNKHGRGHV NFIRCSNCGK CCPKDKAIKR FLVRNIVEQA AVRDVQEACA YDGYTLPKLY
101: IKMQYCVSCA IHSKVVRVRS RTDRRNREPP QRFRRRDDLP RPGQGPRPAG AGNPPRP
101: IKMQYCVSCA IHSKVVRVRS RTDRRNREPP QRFRRRDDLP RPGQGPRPAG AGNPPRP
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.