Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0225100-01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | Os01t0225100-01 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5A01G469300.1 | Wheat | golgi | 60.56 | 30.94 |
| Os01t0823300-00 | Rice | nucleus | 56.34 | 30.08 |
| Os05t0477300-03 | Rice | nucleus, plastid | 56.34 | 29.41 |
| OQU90753 | Sorghum | plastid | 60.56 | 27.39 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 59.15 | 26.92 |
| PGSC0003DMT400062735 | Potato | cytosol | 33.8 | 22.86 |
| Solyc06g007470.2.1 | Tomato | nucleus | 40.85 | 22.83 |
| PGSC0003DMT400053000 | Potato | cytosol | 40.85 | 22.83 |
| Solyc04g008810.2.1 | Tomato | nucleus | 40.85 | 22.66 |
| PGSC0003DMT400065105 | Potato | cytosol | 40.85 | 22.66 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 39.44 | 22.58 |
| KRH53763 | Soybean | nucleus | 40.85 | 22.48 |
| KRH17252 | Soybean | nucleus | 40.85 | 22.31 |
| KRH72901 | Soybean | nucleus | 40.85 | 22.31 |
| KRH57998 | Soybean | nucleus | 39.44 | 21.71 |
| KRH64187 | Soybean | nucleus | 39.44 | 21.71 |
| CDY68398 | Canola | cytosol | 40.85 | 21.64 |
| CDX67642 | Canola | cytosol | 40.85 | 21.64 |
| Bra007238.1-P | Field mustard | cytosol | 40.85 | 21.64 |
| CDX72145 | Canola | cytosol | 40.85 | 21.64 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 46.48 | 21.57 |
| CDY25697 | Canola | cytosol | 39.44 | 21.54 |
| AT3G56340.1 | Thale cress | cytosol | 39.44 | 21.54 |
| AT2G40590.1 | Thale cress | cytosol | 39.44 | 21.37 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 40.85 | 21.17 |
| AT2G40510.1 | Thale cress | cytosol | 39.44 | 21.05 |
| CDY27223 | Canola | cytosol, mitochondrion | 40.85 | 21.01 |
| PGSC0003DMT400059492 | Potato | cytosol | 30.99 | 20.95 |
| KRH04512 | Soybean | nucleus | 38.03 | 20.93 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 59.15 | 20.79 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 42.25 | 20.0 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 38.03 | 19.85 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 43.66 | 19.75 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 40.85 | 19.73 |
| Bra014697.1-P | Field mustard | cytosol | 40.85 | 18.95 |
| CDY24898 | Canola | cytosol, plastid | 40.85 | 17.58 |
| CDY07599 | Canola | plastid | 40.85 | 17.58 |
| CDY06976 | Canola | cytosol | 40.85 | 16.57 |
| CDY50450 | Canola | mitochondrion | 40.85 | 16.38 |
| CDX75988 | Canola | cytosol | 40.85 | 16.38 |
| KRH06932 | Soybean | cytosol | 18.31 | 12.26 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 42.25 | 10.56 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | ProteinID:BAH92414.1 | ProteinID:BAS87042.1 | UniProt:C7J055 | GO:GO:0003674 |
| GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 |
| GO:GO:0022627 | InterPro:IPR038551 | EnsemblPlantsGene:Os03g0816200 | EnsemblPlants:Os03t0816200-01 | PFAM:PF01283 | PANTHER:PTHR12538 |
| PANTHER:PTHR12538:SF1 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0001B65FBB | : | : |
Description
Ribosomal protein S26e domain containing protein. (Os03t0816200-01)
Coordinates
chr3:+:34215410..34218100
Molecular Weight (calculated)
8353.0 Da
IEP (calculated)
7.283
GRAVY (calculated)
-0.359
Length
71 amino acids
Sequence
(BLAST)
(BLAST)
1: DMQEACVHDG HVLPKLYAKV HHCVSWNAIH AHIVSVRSCE NRRNCELPQH FRPSLLLDDH LPFKELFFQH T
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.