CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
OQU86087

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	OQU86087	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	81.53	96.97
TraesCS5A01G469300.1	Wheat	golgi	73.25	82.73
VIT_06s0004g07940.t01	Wine grape	cytosol	63.06	79.84
PGSC0003DMT400053000	Potato	cytosol	64.33	79.53
Solyc06g007470.2.1	Tomato	nucleus	64.33	79.53
EES19692	Sorghum	cytosol, nucleus, plastid	68.15	79.26
Solyc04g008810.2.1	Tomato	nucleus	64.33	78.91
PGSC0003DMT400065105	Potato	cytosol	64.33	78.91
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	73.25	78.77
KRH17252	Soybean	nucleus	64.97	78.46
KRH72901	Soybean	nucleus	64.33	77.69
KRH57998	Soybean	nucleus	63.06	76.74
KRH53763	Soybean	nucleus	63.06	76.74
KRH64187	Soybean	nucleus	62.42	75.97
KRH04512	Soybean	nucleus	62.42	75.97
TraesCS5B01G481800.1	Wheat	nucleus	75.16	75.64
CDY25697	Canola	cytosol	61.78	74.62
AT3G56340.1	Thale cress	cytosol	61.78	74.62
GSMUA_Achr3P17860_001	Banana	mitochondrion	64.97	74.45
AT2G40590.1	Thale cress	cytosol	60.51	72.52
Bra007238.1-P	Field mustard	cytosol	61.78	72.39
CDX72145	Canola	cytosol	61.78	72.39
AT2G40510.1	Thale cress	cytosol	61.15	72.18
CDY68398	Canola	cytosol	61.15	71.64
CDX67642	Canola	cytosol	61.15	71.64
CDY27223	Canola	cytosol, mitochondrion	62.42	71.01
PGSC0003DMT400059492	Potato	cytosol	46.5	69.52
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	64.97	69.39
VIT_13s0067g02700.t01	Wine grape	plastid	63.69	66.67
GSMUA_Achr6P23430_001	Banana	plastid	66.24	66.24
KRH06932	Soybean	cytosol	43.95	65.09
Bra014697.1-P	Field mustard	cytosol	62.42	64.05
GSMUA_Achr6P15550_001	Banana	cytosol	52.87	61.03
CDY24898	Canola	cytosol, plastid	63.69	60.61
Os03t0816200-01	Rice	cytosol	27.39	60.56
CDY07599	Canola	plastid	63.06	60.0
CDY50450	Canola	mitochondrion	63.69	56.5
CDY06976	Canola	cytosol	62.42	56.0
CDX75988	Canola	cytosol	63.06	55.93
PGSC0003DMT400062735	Potato	cytosol	36.31	54.29
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	61.15	33.8

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	UniProt:A0A1Z5S482	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529
InterPro:IPR038551	EnsemblPlants:OQU90753	ProteinID:OQU90753	ProteinID:OQU90753.1	PFAM:PF01283	ScanProsite:PS00733
PANTHER:PTHR12538	PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf	EnsemblPlantsGene:SORBI_3001G039400	UniParc:UPI000B8B9D93
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:-:2938433..2941774

Molecular Weight (calculated)

17451.2 Da

IEP (calculated)

11.591

GRAVY (calculated)

-0.787

Length

157 amino acids

Sequence
(BLAST)

001: MELSAKVYLS ANPSPPQRRL GAPPAMTFKR RNGGRNKHGR GHVKYIRCSN CAKCCPKDKA IKRFLVRNIV EQAAVRDVQE ACVHDGYVLP KLYAKVHHCV
101: SCAIHAHIVR VRSRENRRNR EPPQRFRRRD DGPRPGQGPP RPGGAAPAAA PAAAPRT

Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA

Arabidopsis Description

RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.