CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX71154
CDY02832
CDY32688
CDY61025

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	CDX71154	AT5G58720.1	21798944
AT2G40590.1	CDY02832	AT5G58720.1	21798944
AT2G40590.1	CDY32688	AT5G58720.1	21798944
AT2G40590.1	CDY61025	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
AT2G40590.1	Thale cress	cytosol	75.15	94.66
CDX67642	Canola	cytosol	76.36	94.03
CDY68398	Canola	cytosol	76.36	94.03
AT2G40510.1	Thale cress	cytosol	75.15	93.23
CDY25697	Canola	cytosol	73.33	93.08
CDX72145	Canola	cytosol	73.94	91.04
CDY27223	Canola	cytosol, mitochondrion	74.55	89.13
VIT_06s0004g07940.t01	Wine grape	cytosol	65.45	87.1
CDY24898	Canola	cytosol, plastid	86.06	86.06
KRH17252	Soybean	nucleus	65.45	83.08
KRH64187	Soybean	nucleus	64.85	82.95
KRH04512	Soybean	nucleus	64.85	82.95
KRH72901	Soybean	nucleus	64.85	82.31
KRH57998	Soybean	nucleus	64.24	82.17
KRH53763	Soybean	nucleus	64.24	82.17
PGSC0003DMT400053000	Potato	cytosol	61.82	80.31
Solyc06g007470.2.1	Tomato	nucleus	61.82	80.31
PGSC0003DMT400065105	Potato	cytosol	61.21	78.91
Solyc04g008810.2.1	Tomato	nucleus	61.21	78.91
CDY06976	Canola	cytosol	80.61	76.0
PGSC0003DMT400059492	Potato	cytosol	47.27	74.29
GSMUA_Achr3P17860_001	Banana	mitochondrion	61.21	73.72
Zm00001d012992_P002	Maize	mitochondrion, plasma membrane	58.79	73.48
VIT_13s0067g02700.t01	Wine grape	plastid	66.67	73.33
Os01t0823300-00	Rice	nucleus	58.18	72.18
CDY50450	Canola	mitochondrion	76.97	71.75
CDX75988	Canola	cytosol	76.36	71.19
HORVU3Hr1G081220.1	Barley	cytosol	45.45	70.09
EES19692	Sorghum	cytosol, nucleus, plastid	56.97	69.63
Os05t0477300-03	Rice	nucleus, plastid	56.97	69.12
KRH06932	Soybean	cytosol	44.24	68.87
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	61.21	68.71
TraesCS5A01G469300.1	Wheat	golgi	56.97	67.63
GSMUA_Achr6P23430_001	Banana	plastid	63.03	66.24
Zm00001d010614_P007	Maize	cytosol, mitochondrion, nucleus	59.39	65.77
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	57.58	65.07
OQU90753	Sorghum	plastid	60.0	63.06
TraesCS5B01G481800.1	Wheat	nucleus	58.79	62.18
GSMUA_Achr6P15550_001	Banana	cytosol	50.3	61.03
TraesCS3D01G338700.1	Wheat	cytosol	50.3	58.45
TraesCS3A01G344900.1	Wheat	cytosol	50.91	56.38
PGSC0003DMT400062735	Potato	cytosol	33.94	53.33
HORVU3Hr1G081210.2	Barley	cytosol, nucleus	40.0	48.53
TraesCS3B01G377000.1	Wheat	nucleus	44.24	48.03
Zm00001d034609_P001	Maize	cytosol, nucleus, plasma membrane	55.15	45.05
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	42.42	43.48
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	41.82	42.86
Os03t0816200-01	Rice	cytosol	17.58	40.85
HORVU4Hr1G034100.2	Barley	cytosol	35.76	38.56
CDX67643	Canola	cytosol	9.09	9.26

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	GO:A0A078F3M4	UniProt:A0A078F3M4	EnsemblPlants:CDY07599	ProteinID:CDY07599
ProteinID:CDY07599.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	EnsemblPlantsGene:GSBRNA2T00124695001	InterPro:IPR038551
PFAM:PF01283	ScanProsite:PS00733	PANTHER:PTHR12538	PANTHER:PTHR12538:SF6	InterPro:Ribosomal_S26e	InterPro:Ribosomal_S26e_sf
UniParc:UPI0004EEFDFE	SEG:seg	:	:	:	:

Description

BnaA03g19120D40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A078F3M4]

Coordinates

chrLK031980:+:7379..9265

Molecular Weight (calculated)

18657.5 Da

IEP (calculated)

11.900

GRAVY (calculated)

-0.909

Length

165 amino acids

Sequence
(BLAST)

001: MFSPTNFTSR VTLAADTHTH SSPEERSLSR RRRAKKMTFK RRNGGRNKHN RGHVKPIRCS NCGKCCPKDK AIKRFIVRNI VEQAAIRDVQ EASVYDGYTL
101: PKLYAKTQYC VSCAIHSHVV RVRSRTNRRV RTPPPRFVRR KEDAPKPGQP GQAPRPAGAA AAPRA

Best Arabidopsis Sequence Match ( AT2G40510.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV

Arabidopsis Description

RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.