Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400010646 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | PGSC0003DMT400010646 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc04g008810.2.1 | Tomato | nucleus | 100.0 | 100.0 |
| PGSC0003DMT400053000 | Potato | cytosol | 97.66 | 98.43 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 85.16 | 87.9 |
| KRH53763 | Soybean | nucleus | 86.72 | 86.05 |
| KRH57998 | Soybean | nucleus | 85.94 | 85.27 |
| KRH64187 | Soybean | nucleus | 85.94 | 85.27 |
| KRH17252 | Soybean | nucleus | 85.94 | 84.62 |
| KRH72901 | Soybean | nucleus | 85.94 | 84.62 |
| KRH04512 | Soybean | nucleus | 85.16 | 84.5 |
| PGSC0003DMT400059492 | Potato | cytosol | 68.75 | 83.81 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 85.16 | 79.56 |
| AT3G56340.1 | Thale cress | cytosol | 80.47 | 79.23 |
| CDY25697 | Canola | cytosol | 78.91 | 77.69 |
| AT2G40590.1 | Thale cress | cytosol | 78.91 | 77.1 |
| Bra007238.1-P | Field mustard | cytosol | 79.69 | 76.12 |
| AT2G40510.1 | Thale cress | cytosol | 78.91 | 75.94 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 78.12 | 75.76 |
| CDX72145 | Canola | cytosol | 78.91 | 75.37 |
| CDX67642 | Canola | cytosol | 78.12 | 74.63 |
| CDY68398 | Canola | cytosol | 78.12 | 74.63 |
| CDY27223 | Canola | cytosol, mitochondrion | 79.69 | 73.91 |
| KRH06932 | Soybean | cytosol | 60.94 | 73.58 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 85.16 | 72.67 |
| PGSC0003DMT400062735 | Potato | cytosol | 59.38 | 72.38 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 82.81 | 72.11 |
| Os01t0823300-00 | Rice | nucleus | 73.44 | 70.68 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 85.94 | 70.06 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 57.81 | 69.16 |
| Os05t0477300-03 | Rice | nucleus, plastid | 72.66 | 68.38 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 71.88 | 67.65 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 71.09 | 67.41 |
| TraesCS5A01G469300.1 | Wheat | golgi | 71.88 | 66.19 |
| Bra014697.1-P | Field mustard | cytosol | 78.91 | 66.01 |
| OQU90753 | Sorghum | plastid | 78.91 | 64.33 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 71.88 | 63.01 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 75.0 | 61.54 |
| CDY07599 | Canola | plastid | 78.91 | 61.21 |
| CDY24898 | Canola | cytosol, plastid | 78.91 | 61.21 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 70.31 | 60.4 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 64.84 | 58.45 |
| CDY06976 | Canola | cytosol | 78.91 | 57.71 |
| CDY50450 | Canola | mitochondrion | 79.69 | 57.63 |
| CDX75988 | Canola | cytosol | 78.91 | 57.06 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 64.84 | 55.7 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 50.0 | 47.06 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 53.91 | 45.39 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 69.53 | 44.06 |
| Os03t0816200-01 | Rice | cytosol | 22.66 | 40.85 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 50.0 | 39.75 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 50.0 | 39.75 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 43.75 | 36.6 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 75.78 | 34.15 |
Protein Annotations
| EntrezGene:102599327 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0030529 |
| InterPro:IPR038551 | UniProt:M1CDE9 | PFAM:PF01283 | EnsemblPlantsGene:PGSC0003DMG400025305 | PGSC:PGSC0003DMG400025305 | EnsemblPlants:PGSC0003DMT400065105 |
| ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0002767323 |
| RefSeq:XP_006360848.1 | SEG:seg | : | : | : | : |
Description
Ribosomal protein S26 [Source:PGSC_GENE;Acc:PGSC0003DMG400025305]
Coordinates
chr4:+:3939745..3941908
Molecular Weight (calculated)
14589.9 Da
IEP (calculated)
11.518
GRAVY (calculated)
-0.727
Length
128 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKHGRGHVKF IRCSNCGKCC PKDKAIKRFL VRNIVEQAAV RDVQEACAFE LYTLPKLYLK MQYCVSCAIH SKVVRVRSRT DRRVREPPQR
101: FRRPRDDLPK AGQAPRPAGG APPAAART
101: FRRPRDDLPK AGQAPRPAGG APPAAART
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
101: FTRRKEDTPK PGQPGQAPRP AGPGAAAAPR V
Arabidopsis Description
RPS26A40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VPZ6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.