Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 3
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G150300.2 | |
| TraesCS3B01G177300.1 | |
| TraesCS3D01G158200.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | TraesCS3A01G150300.2 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | TraesCS3B01G177300.1 | AT5G58720.1 | 21798944 |
| AT2G40590.1 | TraesCS3D01G158200.1 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU3Hr1G081220.1 | Barley | cytosol | 67.61 | 89.72 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 87.32 | 83.22 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 58.45 | 66.94 |
| AT3G56340.1 | Thale cress | cytosol | 60.56 | 66.15 |
| Solyc06g007470.2.1 | Tomato | nucleus | 59.15 | 66.14 |
| PGSC0003DMT400053000 | Potato | cytosol | 59.15 | 66.14 |
| Os01t0823300-00 | Rice | nucleus | 61.27 | 65.41 |
| Solyc04g008810.2.1 | Tomato | nucleus | 58.45 | 64.84 |
| PGSC0003DMT400065105 | Potato | cytosol | 58.45 | 64.84 |
| KRH64187 | Soybean | nucleus | 58.45 | 64.34 |
| KRH53763 | Soybean | nucleus | 58.45 | 64.34 |
| AT2G40590.1 | Thale cress | cytosol | 59.15 | 64.12 |
| AT2G40510.1 | Thale cress | cytosol | 59.86 | 63.91 |
| CDY25697 | Canola | cytosol | 58.45 | 63.85 |
| KRH04512 | Soybean | nucleus | 57.75 | 63.57 |
| KRH57998 | Soybean | nucleus | 57.75 | 63.57 |
| KRH17252 | Soybean | nucleus | 57.75 | 63.08 |
| KRH72901 | Soybean | nucleus | 57.75 | 63.08 |
| CDY68398 | Canola | cytosol | 58.45 | 61.94 |
| CDX67642 | Canola | cytosol | 58.45 | 61.94 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 59.15 | 61.31 |
| Bra007238.1-P | Field mustard | cytosol | 57.75 | 61.19 |
| PGSC0003DMT400059492 | Potato | cytosol | 45.07 | 60.95 |
| CDX72145 | Canola | cytosol | 57.04 | 60.45 |
| CDY27223 | Canola | cytosol, mitochondrion | 57.75 | 59.42 |
| KRH06932 | Soybean | cytosol | 41.55 | 55.66 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 58.45 | 55.33 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 57.04 | 55.1 |
| Bra014697.1-P | Field mustard | cytosol | 57.75 | 53.59 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 60.56 | 53.42 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 50.7 | 52.94 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 58.45 | 52.87 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 59.86 | 52.8 |
| CDY07599 | Canola | plastid | 58.45 | 50.3 |
| CDY24898 | Canola | cytosol, plastid | 58.45 | 50.3 |
| PGSC0003DMT400062735 | Potato | cytosol | 35.92 | 48.57 |
| CDY06976 | Canola | cytosol | 58.45 | 47.43 |
| CDX75988 | Canola | cytosol | 57.75 | 46.33 |
| CDY50450 | Canola | mitochondrion | 57.75 | 46.33 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 56.34 | 28.17 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR038551 | PFAM:PF01283 |
| ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF1 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | EnsemblPlantsGene:TraesCS3D01G338700 |
| EnsemblPlants:TraesCS3D01G338700.1 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chr3D:+:451889661..451890799
Molecular Weight (calculated)
15558.9 Da
IEP (calculated)
11.180
GRAVY (calculated)
-0.662
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MTFKRRNGGR NKQGRGHVKF VRCSNCAKCV PKDKAIKRFK VRNIVEAAGM RDIKDACVFE GYVLPKLYIL EHYCVSCAIH QHQVRVRSRE NRKNRAPPER
101: FSRFKEARPE GQAPRPGGIG AGPGGAAGGL GTGSPAPNVA ST
101: FSRFKEARPE GQAPRPGGIG AGPGGAAGGL GTGSPAPNVA ST
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.