Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- vacuole 1
- mitochondrion 1
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_06s0004g06590.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT2G40590.1 | VIT_06s0004g06590.t01 | AT5G58720.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 79.33 | 95.97 |
| KRH04512 | Soybean | nucleus | 78.0 | 90.7 |
| KRH17252 | Soybean | nucleus | 77.33 | 89.23 |
| KRH72901 | Soybean | nucleus | 77.33 | 89.23 |
| KRH57998 | Soybean | nucleus | 76.67 | 89.15 |
| KRH53763 | Soybean | nucleus | 76.0 | 88.37 |
| KRH64187 | Soybean | nucleus | 75.33 | 87.6 |
| Solyc06g007470.2.1 | Tomato | nucleus | 72.67 | 85.83 |
| PGSC0003DMT400053000 | Potato | cytosol | 72.67 | 85.83 |
| Solyc04g008810.2.1 | Tomato | nucleus | 72.67 | 85.16 |
| PGSC0003DMT400065105 | Potato | cytosol | 72.67 | 85.16 |
| CDY25697 | Canola | cytosol | 69.33 | 80.0 |
| AT3G56340.1 | Thale cress | cytosol | 69.33 | 80.0 |
| AT2G40590.1 | Thale cress | cytosol | 69.33 | 79.39 |
| Bra007238.1-P | Field mustard | cytosol | 70.0 | 78.36 |
| AT2G40510.1 | Thale cress | cytosol | 69.33 | 78.2 |
| PGSC0003DMT400059492 | Potato | cytosol | 54.67 | 78.1 |
| CDX72145 | Canola | cytosol | 69.33 | 77.61 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 70.67 | 77.37 |
| CDY68398 | Canola | cytosol | 68.67 | 76.87 |
| CDX67642 | Canola | cytosol | 68.67 | 76.87 |
| CDY27223 | Canola | cytosol, mitochondrion | 70.0 | 76.09 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 66.0 | 75.0 |
| KRH06932 | Soybean | cytosol | 52.67 | 74.53 |
| Os01t0823300-00 | Rice | nucleus | 64.0 | 72.18 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 70.67 | 72.11 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 50.67 | 71.03 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 72.67 | 69.43 |
| Os05t0477300-03 | Rice | nucleus, plastid | 62.67 | 69.12 |
| Bra014697.1-P | Field mustard | cytosol | 70.0 | 68.63 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 62.0 | 68.38 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 61.33 | 68.15 |
| TraesCS5A01G469300.1 | Wheat | golgi | 62.67 | 67.63 |
| CDY07599 | Canola | plastid | 73.33 | 66.67 |
| CDY24898 | Canola | cytosol, plastid | 72.0 | 65.45 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 62.67 | 64.38 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 63.33 | 63.76 |
| OQU90753 | Sorghum | plastid | 66.67 | 63.69 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 64.67 | 62.18 |
| PGSC0003DMT400062735 | Potato | cytosol | 43.33 | 61.9 |
| CDY06976 | Canola | cytosol | 72.0 | 61.71 |
| CDY50450 | Canola | mitochondrion | 70.67 | 59.89 |
| CDX75988 | Canola | cytosol | 70.67 | 59.89 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 55.33 | 58.45 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 55.33 | 55.7 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 43.33 | 47.79 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 48.0 | 47.37 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 61.33 | 45.54 |
| Os03t0816200-01 | Rice | cytosol | 20.0 | 42.25 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 44.67 | 41.61 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 44.0 | 40.99 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 38.0 | 37.25 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 68.0 | 35.92 |
Protein Annotations
| EntrezGene:100265511 | wikigene:100265511 | MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | ProteinID:CBI25376 | ProteinID:CBI25376.3 |
| UniProt:D7T4E4 | EMBL:FN595514 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003729 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | GO:GO:0022627 | GO:GO:0030529 | InterPro:IPR038551 |
| EntrezGene:LOC100265511 | wikigene:LOC100265511 | PFAM:PF01283 | ScanProsite:PS00733 | PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 |
| InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | TIGR:TC60789 | UniParc:UPI0001BE2896 | ArrayExpress:VIT_13s0067g02700 | EnsemblPlantsGene:VIT_13s0067g02700 |
| EnsemblPlants:VIT_13s0067g02700.t01 | unigene:Vvi.12696 | RefSeq:XP_002279872 | RefSeq:XP_002279872.1 | SEG:seg | : |
Description
40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:D7T4E4]
Coordinates
chr13:-:1450063..1452246
Molecular Weight (calculated)
16993.8 Da
IEP (calculated)
11.721
GRAVY (calculated)
-0.777
Length
150 amino acids
Sequence
(BLAST)
(BLAST)
001: MGGRTGLISN PSPAQFAAPR TRSLTVMTFK RRNGGRNKHG RGHVKFIRCS NCGKCCPKDK AIKRFLVRNI VEQAAVRDVQ EACVYDTYTL PKLYAKMQYC
101: VSCAIHSHVV RVRSRTDRRK RDPPQRFRRR DDMPKPGQAP RPAGGAPVRT
101: VSCAIHSHVV RVRSRTDRRK RDPPQRFRRR DDMPKPGQAP RPAGGAPVRT
001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA
Arabidopsis Description
RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.