Factsheet for HORVU3Hr1G081210.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus, cytosol

Predictor Summary:

cytosol 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus
Any Predictor:	cytosol
MultiLoc:	cytosol
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU3Hr1G030600.8

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40590.1	HORVU3Hr1G030600.8	AT5G58720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU3Hr1G081220.1	Barley	cytosol	50.74	64.49
TraesCS3B01G377000.1	Wheat	nucleus	63.24	56.58
TraesCS3D01G338900.1	Wheat	cytosol, nucleus, plastid	61.76	52.17
VIT_06s0004g07940.t01	Wine grape	cytosol	47.06	51.61
TraesCS3D01G338800.1	Wheat	cytosol, mitochondrion, nucleus	61.03	51.55
Solyc06g007470.2.1	Tomato	nucleus	47.06	50.39
PGSC0003DMT400053000	Potato	cytosol	47.06	50.39
KRH64187	Soybean	nucleus	47.79	50.39
KRH57998	Soybean	nucleus	47.79	50.39
KRH53763	Soybean	nucleus	47.79	50.39
KRH04512	Soybean	nucleus	47.79	50.39
GSMUA_Achr3P17860_001	Banana	mitochondrion	50.74	50.37
KRH72901	Soybean	nucleus	47.79	50.0
PGSC0003DMT400065105	Potato	cytosol	47.06	50.0
Solyc04g008810.2.1	Tomato	nucleus	47.06	50.0
KRH17252	Soybean	nucleus	47.79	50.0
PGSC0003DMT400059492	Potato	cytosol	37.5	48.57
CDY25697	Canola	cytosol	46.32	48.46
AT3G56340.1	Thale cress	cytosol	46.32	48.46
Os01t0823300-00	Rice	nucleus	47.06	48.12
AT2G40590.1	Thale cress	cytosol	46.32	48.09
AT2G40510.1	Thale cress	cytosol	46.32	47.37
GSMUA_Achr6P15550_001	Banana	cytosol	47.06	47.06
CDX72145	Canola	cytosol	45.59	46.27
Bra007238.1-P	Field mustard	cytosol	45.59	46.27
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	49.26	45.58
CDY68398	Canola	cytosol	44.85	45.52
CDX67642	Canola	cytosol	44.85	45.52
GSMUA_Achr6P23430_001	Banana	plastid	51.47	44.59
CDY27223	Canola	cytosol, mitochondrion	44.85	44.2
VIT_13s0067g02700.t01	Wine grape	plastid	47.79	43.33
HORVU5Hr1G111820.2	Barley	cytosol, nucleus	45.59	42.47
KRH06932	Soybean	cytosol	33.09	42.45
CDY24898	Canola	cytosol, plastid	49.26	40.61
CDY07599	Canola	plastid	48.53	40.0
Bra014697.1-P	Field mustard	cytosol	44.85	39.87
CDY06976	Canola	cytosol	47.06	36.57
CDY50450	Canola	mitochondrion	46.32	35.59
CDX75988	Canola	cytosol	45.59	35.03
PGSC0003DMT400062735	Potato	cytosol	26.47	34.29
HORVU4Hr1G034100.2	Barley	cytosol	29.41	26.14
Bra003237.1-P	Field mustard	cytosol, nucleus, peroxisome	45.59	21.83

Protein Annotations

MapMan:17.1.3.1.27	Gene3D:3.30.1740.20	UniProt:A0A287LWW9	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:HORVU3Hr1G081210
EnsemblPlants:HORVU3Hr1G081210.2	InterPro:IPR038551	PFAM:PF01283	PANTHER:PTHR12538	PANTHER:PTHR12538:SF1	InterPro:Ribosomal_S26e
InterPro:Ribosomal_S26e_sf	UniParc:UPI000B47FD87	:	:	:	:

Description

40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A287LWW9]

Coordinates

chrchr3H:-:593907145..593907932

Molecular Weight (calculated)

15368.6 Da

IEP (calculated)

10.701

GRAVY (calculated)

-0.787

Length

136 amino acids

Sequence
(BLAST)

001: YKDPQTSELG DAAADHAPYI SRCHPSVAAA AAMTFKRRNG GRSKHGRGHV RFLRCDNCGK SVPKDKAIKR YSVKNIVAAE GIRDFNEACV LEGYHLPKIY
101: IKERWCIGCA IHRKEIGVRA RKDRKNRAPP ERLGRR

Best Arabidopsis Sequence Match ( AT3G56340.1 )
(BLAST)

001: MTFKRRNGGR NKHNRGHVKP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PAQPGQAPRP AGGAPAAPRA

Arabidopsis Description

RPS26C40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VFW7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.