Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra007238.1-P | Field mustard | cytosol | 81.7 | 93.28 |
| AT3G56340.1 | Thale cress | cytosol | 79.08 | 93.08 |
| VIT_06s0004g07940.t01 | Wine grape | cytosol | 69.28 | 85.48 |
| KRH64187 | Soybean | nucleus | 69.28 | 82.17 |
| KRH53763 | Soybean | nucleus | 68.63 | 81.4 |
| KRH17252 | Soybean | nucleus | 68.63 | 80.77 |
| KRH57998 | Soybean | nucleus | 67.97 | 80.62 |
| KRH04512 | Soybean | nucleus | 67.97 | 80.62 |
| Solyc06g007470.2.1 | Tomato | nucleus | 66.67 | 80.31 |
| PGSC0003DMT400053000 | Potato | cytosol | 66.67 | 80.31 |
| KRH72901 | Soybean | nucleus | 67.97 | 80.0 |
| Solyc04g008810.2.1 | Tomato | nucleus | 66.01 | 78.91 |
| PGSC0003DMT400065105 | Potato | cytosol | 66.01 | 78.91 |
| GSMUA_Achr3P17860_001 | Banana | mitochondrion | 67.97 | 75.91 |
| PGSC0003DMT400059492 | Potato | cytosol | 50.33 | 73.33 |
| CDX75988 | Canola | cytosol | 84.31 | 72.88 |
| Zm00001d012992_P002 | Maize | mitochondrion, plasma membrane | 62.75 | 72.73 |
| CDY50450 | Canola | mitochondrion | 83.01 | 71.75 |
| Os01t0823300-00 | Rice | nucleus | 61.44 | 70.68 |
| VIT_13s0067g02700.t01 | Wine grape | plastid | 68.63 | 70.0 |
| KRH06932 | Soybean | cytosol | 48.37 | 69.81 |
| HORVU3Hr1G081220.1 | Barley | cytosol | 47.71 | 68.22 |
| EES19692 | Sorghum | cytosol, nucleus, plastid | 60.13 | 68.15 |
| Os05t0477300-03 | Rice | nucleus, plastid | 60.13 | 67.65 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 64.71 | 67.35 |
| TraesCS5A01G469300.1 | Wheat | golgi | 60.78 | 66.91 |
| GSMUA_Achr6P23430_001 | Banana | plastid | 67.32 | 65.61 |
| Zm00001d010614_P007 | Maize | cytosol, mitochondrion, nucleus | 63.4 | 65.1 |
| HORVU5Hr1G111820.2 | Barley | cytosol, nucleus | 62.09 | 65.07 |
| GSMUA_Achr6P15550_001 | Banana | cytosol | 55.56 | 62.5 |
| OQU90753 | Sorghum | plastid | 64.05 | 62.42 |
| TraesCS5B01G481800.1 | Wheat | nucleus | 62.75 | 61.54 |
| TraesCS3D01G338700.1 | Wheat | cytosol | 53.59 | 57.75 |
| PGSC0003DMT400062735 | Potato | cytosol | 37.91 | 55.24 |
| TraesCS3A01G344900.1 | Wheat | cytosol | 53.59 | 55.03 |
| TraesCS3B01G377000.1 | Wheat | nucleus | 46.41 | 46.71 |
| HORVU3Hr1G081210.2 | Barley | cytosol, nucleus | 39.87 | 44.85 |
| Zm00001d034609_P001 | Maize | cytosol, nucleus, plasma membrane | 57.52 | 43.56 |
| TraesCS3D01G338900.1 | Wheat | cytosol, nucleus, plastid | 44.44 | 42.24 |
| Bra003237.1-P | Field mustard | cytosol, nucleus, peroxisome | 77.78 | 41.9 |
| TraesCS3D01G338800.1 | Wheat | cytosol, mitochondrion, nucleus | 43.79 | 41.61 |
| Os03t0816200-01 | Rice | cytosol | 18.95 | 40.85 |
| HORVU4Hr1G034100.2 | Barley | cytosol | 39.22 | 39.22 |
Protein Annotations
| MapMan:17.1.3.1.27 | Gene3D:3.30.1740.20 | EnsemblPlantsGene:Bra014697 | EnsemblPlants:Bra014697.1 | EnsemblPlants:Bra014697.1-P | GO:GO:0003674 |
| GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 |
| GO:GO:0019538 | GO:GO:0030529 | InterPro:IPR038551 | UniProt:M4DDX8 | PFAM:PF01283 | ScanProsite:PS00733 |
| PANTHER:PTHR12538 | PANTHER:PTHR12538:SF6 | InterPro:Ribosomal_S26e | InterPro:Ribosomal_S26e_sf | UniParc:UPI0002544790 | SEG:seg |
Description
AT2G40510 (E=2e-036) | 40S ribosomal protein S26 (RPS26A)
Coordinates
chrA04:+:2310392..2311583
Molecular Weight (calculated)
17064.7 Da
IEP (calculated)
11.392
GRAVY (calculated)
-0.716
Length
153 amino acids
Sequence
(BLAST)
(BLAST)
001: MSIMGKENVA TRFSCVHGLR EHALTFKRRN GGRNKHNRGH VNPIRCSNCG KCCPKDKAIK RFLVRNIVEQ AAIRDVQEAS VYDGYTLPKL YAKMQYCVSC
101: AIHSHVVRVR SSTNRRVRTP PPRFARRKED APKPGHPGQA PRPAGGAPAA PRA
101: AIHSHVVRVR SSTNRRVRTP PPRFARRKED APKPGHPGQA PRPAGGAPAA PRA
001: MTFKRRNGGR NKHNRGHVNP IRCSNCGKCC PKDKAIKRFI VRNIVEQAAI RDVQEASVYE GYTLPKLYAK TQYCVSCAIH SHVVRVRSRT NRRVRTPPPR
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
101: FARRKEDTPK PGQPGQAPRP AGPGAAAAAA PRV
Arabidopsis Description
RPS26B40S ribosomal protein S26 [Source:UniProtKB/TrEMBL;Acc:A0A178VTX1]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.