CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88603
EER95202
EES02737
EES05908
EES07517
KXG21309
KXG33895
OQU91808

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G04660.1	EES02737	AT1G06590.1	20706207
AT2G04660.1	EER95202	AT1G78770.1	20706207
AT2G04660.1	KXG33895	AT2G20000.1	17944809
AT2G04660.1	KXG33895	AT2G20000.1	20706207
AT2G04660.1	KXG21309	AT2G39090.1	20706207
AT2G04660.1	KXG33895	AT3G16320.1	20706207
AT2G04660.1	EES07517	AT3G48150.1	14508008
AT2G04660.1	EES07517	AT3G48150.1	20706207
AT2G04660.1	EES05908	AT4G21530.1	20706207
AT2G04660.1	EER88603	AT5G19990.1	20706207
AT2G04660.1	OQU91808	ATMG00510.1	20706207

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d014685_P009	Maize	cytosol	95.34	95.23
HORVU2Hr1G083840.8	Barley	cytosol	54.48	89.48
TraesCS2D01G341700.1	Wheat	cytosol	86.26	86.16
TraesCS2B01G361700.1	Wheat	cytosol	86.26	86.16
TraesCS2A01G321000.1	Wheat	cytosol	86.03	85.93
Os04t0484800-01	Rice	cytosol	86.15	85.65
HORVU0Hr1G004870.2	Barley	cytosol	22.7	83.69
HORVU0Hr1G004910.1	Barley	cytosol	11.18	77.42
HORVU0Hr1G004980.2	Barley	cytosol	30.73	76.97
KRH32716	Soybean	golgi	23.63	70.98
GSMUA_Achr3P19380_001	Banana	cytosol	70.66	69.37
VIT_01s0026g02730.t01	Wine grape	cytosol	68.92	67.04
KRG97883	Soybean	cytosol	65.19	63.28
KRH30995	Soybean	cytosol	64.96	63.12
AT2G04660.1	Thale cress	cytosol	63.45	63.01
PGSC0003DMT400047444	Potato	cytosol	64.03	62.22
Solyc05g007750.2.1	Tomato	cytosol	63.68	61.95
CDY04835	Canola	cytosol	61.47	61.9
Bra028905.1-P	Field mustard	cytosol	61.35	61.57
Bra025616.1-P	Field mustard	cytosol	59.49	61.34
CDY30835	Canola	cytosol	59.6	61.1
CDY30292	Canola	cytosol	59.95	60.8
KRH74904	Soybean	cytosol, extracellular, peroxisome	5.12	41.12

Protein Annotations

Gene3D:1.10.10.10	Gene3D:1.10.10.2620	Gene3D:1.20.1310.10	MapMan:13.3.4.1.1.3.1	UniProt:A0A194YMF4	InterPro:APC_su2_C
InterPro:Cullin_N	InterPro:Cullin_homology	InterPro:Cullin_homology_sf	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005819	GO:GO:0005856
GO:GO:0006511	GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009561
GO:GO:0009987	GO:GO:0019538	GO:GO:0031625	InterPro:IPR016158	InterPro:IPR036388	EnsemblPlants:KXG20781
ProteinID:KXG20781	ProteinID:KXG20781.1	PFAM:PF00888	PFAM:PF08672	PFscan:PS50069	PANTHER:PTHR11932
PANTHER:PTHR11932:SF5	SMART:SM00182	SMART:SM01013	EnsemblPlantsGene:SORBI_3010G252700	SUPFAM:SSF46785	SUPFAM:SSF75632
UniParc:UPI0007F262F4	InterPro:WH-like_DNA-bd_sf	InterPro:WH_DNA-bd_sf	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr10:+:59165928..59172810

Molecular Weight (calculated)

96631.0 Da

IEP (calculated)

4.710

GRAVY (calculated)

-0.251

Length

859 amino acids

Sequence
(BLAST)

001: MEREDADGAL DSWAQFCSLS NELLAGDGDL TVGPRLAPVV ADLCTRGLAT LVRDYFLYSL EETFRNNAVK KFWQHFHPYC SASAVDRIKF CVKENWPEEI
101: LSKALEDICL EKGYQEKCVL VLVQAFQSYE DRAPQKKFKA VDCISSLMAR YQLMVSSVLL TTLPLSFPDV LNIYFKKKLE ELNTIMAGSY ESDQLVDIEP
201: FQSNTSDWHS GMDIDGSEVS ESSSLVKNIG KVVRDLRCIG FTSMTEDAYS SAIIWLLKSK VYELAGDDYR VPVLGCVKKW IQAVPLQFLH ALLTYLGDSV
301: DYDSGSSSLK SPLASRPSSF PGIGVPSEAL VRWHMRLEYF AYETLQDLRI GKLFEIIVDY PESSPAIEDL KLCLEYTGQH SKLVDSFISS LKYRLLTAGA
401: STNDILHQYV STIKALRTID PTGVFLEAVG EPIRDYLRGR KDTIKCIVTM LTDGSGGSAS GTGNAGDNLL EELNRDAENQ ENADYDDHAN IDEKQAWLNS
501: ESWEPDPVEA DPLKGSRNRR KVDILGLMVS IIGSKDQLVN EYRVMLAEKL LNKSDFEIDS DIRTLELLKI HFGESSMQKC EIMLNDLIDS KRTNSNIKTS
601: LLKTSQTVPG QEEAEVSHDV LDATIISSNF WPPIQTEDLV VPASVDQLLS DYAKRFHQIK TPRKLLWKKN LGTVKLELQF EGRSMQFTVA PVHAAIIMRF
701: QEKSSWTSKT LATEIGIPVD SLNRRISFWT SKGVLTESAG PYADDRTFTV VDSMSDVNKN SIVNERLTEY QMTEEEGESS VASVEEQLKK EMTVYEKFIV
801: GMLTNFGSMS LDRIHNTLKM FCIAEPSYDK SLQQLQSFLS GLVADEKLET RDGLYLLKR

Best Arabidopsis Sequence Match ( AT2G04660.1 )
(BLAST)

001: MEALGSSDCN LEILETLSDD AIQEITESYD GFFTTVESLI AGTGDSLVED EFVSHVYCLC KYGLDSLVRD HFLRSLEQAF EKGGASSFWQ HFDAYSEKKH
101: HNYGEEIQIV LCKALEEISI EKQYHEKCLS IVVHALQSFK EQSSDDRQNS DTERVHLFSR FQSMLSSTLM TTLPQHFPEI LHWYFKERLE ELSAIMDGDG
201: IEEQEDDCMD LDEKLRYKNG EMDVDEGCSQ GKRLGHDKLV KNIGKVVRDL RSIGFTSMAE NAYASAIFLL LKAKVHDLAG DDYRTSVLES IKEWIQTVPL
301: QFLNALLSYL GDSVSYGTTS SGLTSPLACC PSPSFSRVVT PSEGIVRWKL RLEYFAYETL QDLRIAKLFE IIVDYPESSP AIEDLKQCLE YTGQHSKLVE
401: SFISSLKYRL LTAGASTNDI LHQYVSTIKA LRAIDPAGVF LEAVGEPIRD YLRGRKDTIK CIVTMLTDGS GGNANGSGNP GDSLLEELMR DEESQENVGF
501: DDDFHTDDKQ AWINASRWEP DPVEADPLKG SLSQRKVDIL GMLVDIIGSK EQLVNEYRVM LAEKLLNKTD YDIDTEIRTV ELLKIHFGEA SMQRCEIMLN
601: DLIDSKRVNT NIKKASQTGA ELRENELSVD TLTSTILSTN FWPPIQDEPL ELPGPVDKLL SDYANRYHEI KTPRKLLWKK NLGTVKLELQ FEDRAMQFTV
701: SPTHAAIIMQ FQEKKSWTYK DLAEVIGIPI DALNRRVNFW ISKGVLREST GANSNSSVLT LVESITDSGK NEGEELLTGE EEGETSIASV EDQLRKEMTI
801: YEKFIMGMLT NFGSMALERI HNTLKMFCVA DPSYDKSLQQ LQSFLSGLVS EEKLEFRDGM YLLKK

Arabidopsis Description

APC2APC2 [Source:UniProtKB/TrEMBL;Acc:A0A178VYA9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.