CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER94435
EER94451
EER95202
EES02737
EES05908
EES07517
KXG30734
KXG33895
KXG34154
OQU76519
OQU80353

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G39090.1	EES02737	AT1G06590.1	20706207
AT2G39090.1	EER94435	AT1G32310.1	20706207
AT2G39090.1	KXG30734	AT1G32310.1	20706207
AT2G39090.1	KXG34154	AT1G32310.1	20706207
AT2G39090.1	OQU76519	AT1G32310.1	20706207
AT2G39090.1	OQU80353	AT1G32310.1	20706207
AT2G39090.1	EER95202	AT1G78770.1	20706207
AT2G39090.1	KXG33895	AT3G16320.1	20706207
AT2G39090.1	EES07517	AT3G48150.1	20706207
AT2G39090.1	EES05908	AT4G21530.1	20706207
AT2G39090.1	EER94451	AT4G27600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d024858_P004	Maize	cytosol	91.51	94.45
Os05t0149900-01	Rice	cytosol	85.96	88.41
TraesCS1D01G098700.1	Wheat	cytosol	85.1	87.52
TraesCS1A01G090300.1	Wheat	cytosol	85.1	87.52
TraesCS1B01G118300.2	Wheat	cytosol	84.58	86.99
HORVU1Hr1G021230.8	Barley	cytosol	83.19	86.49
GSMUA_Achr5P26960_001	Banana	cytosol	70.02	72.01
VIT_05s0020g01730.t01	Wine grape	cytosol	65.68	67.68
KRH21040	Soybean	nucleus	64.82	66.79
KRH11210	Soybean	cytosol	64.64	66.61
Solyc01g067490.2.1	Tomato	cytosol	62.74	64.53
AT2G39090.1	Thale cress	cytosol	58.06	60.04
CDY44628	Canola	cytosol	58.06	60.04
CDX74867	Canola	cytosol	58.06	60.04
Bra005063.1-P	Field mustard	cytosol	57.89	59.86
CDY53538	Canola	mitochondrion	14.38	54.25
CDY06464	Canola	cytosol	12.48	50.7

Protein Annotations

Gene3D:1.25.40.10	MapMan:13.3.4.1.1.2.3	UniProt:A0A1B6P6H6	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR011990	InterPro:IPR013026	InterPro:IPR019734	EnsemblPlants:KXG21309	ProteinID:KXG21309	ProteinID:KXG21309.1
PFAM:PF13181	PFAM:PF13432	PFscan:PS50005	PFscan:PS50293	PANTHER:PTHR12558	PANTHER:PTHR12558:SF8
SMART:SM00028	EnsemblPlantsGene:SORBI_3009G045000	SUPFAM:SSF48452	InterPro:TPR-contain_dom	InterPro:TPR-like_helical_dom_sf	InterPro:TPR_repeat
UniParc:UPI00081AD8B2	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:+:4289177..4297329

Molecular Weight (calculated)

64859.0 Da

IEP (calculated)

7.562

GRAVY (calculated)

-0.346

Length

577 amino acids

Sequence
(BLAST)

001: MEAARESMAA LLDAGLFGPA QTLGCFLVSS AGAGNDAGMS MKVESLVQHG DALYGEREFR RALNAYKQAM QYSRSIPRQA TSSTRSSVSA TGRSPSPNSS
101: NLLSFNENEV KFKIALCHSA LCEHREALHE MEGIPSKVRT LKMNMMLGKL YRISRNSRTA AVCYKECLRQ CPYVFEAITA LAEMGLSAKE FSLLFPQAPN
201: RGGKVPGDFV DAQRWWTRYV EAQCCIASHD YKGGLDIYLE LMQRFPNNVH ILLEIAKVEA IIGRNDEAIM NFEKARLIDP NIMTYMDEYA ILLKSKSDYV
301: KLNKLVHDML HIDPARPETC VALAAMWKRK DKRKALTYAE KSLRVDDRHI TGYIMKGNLH LSLNRPDLAV TDFRGAQELR ADLRSYQGLV CAYVALSKCK
401: EALFTAREAM KVMHQSAKAL KLVGDVHAIS SSGREKTSVQ DQQQIIIQQR IVLRQARKFY ESAIRLEPGF LGAALALADL HVVEGRNKEA VMLLEKYLRQ
501: WADDSLHIKL AQVHASTNML SDALSHYQSA LRINPQNEAA KNGLERLEKQ MKGVDPDAPE EEEENEEDDI DDRDEFI

Best Arabidopsis Sequence Match ( AT2G39090.1 )
(BLAST)

001: MEVPKEQIAT LIEHGLYDSA EMLGCFLVSS PTVSAETSPQ LKAENLILLG DALFHQREHR RAIHTYKQAL HHYTRIPKQS SGISRSSLSL STRSSVNASS
101: ISAINENEVR FKIASSHFAL NETKAAIAEM ESVKTRSLEM NILMAKLHRN SGYNRGAIAF YKECLRQCPY VLEAVIGLAE LGVSAKDIIS SFTQTSNRSA
201: KVSLDQIDPT RWLQRYVEAQ CCVASHAYKG ALELFAELLQ RFPNNVHLLT ETAKVEAIIG KNDEAIMRFE KVRSIDPYTL TSMDEYAMLL QIKCDYSRLN
301: KLVHDLLSVD HTRAEVFVAL SVLWERKDAR TALSYAEKSI RVDERHIPGY IMKGNLLLQA KRPEAAAIAF RAAQNLRSDL RSYQGLVHSY LAFGKTKEAL
401: YTAREAMNAM PQSAKALKLV GDVHAFTSSG REKAKKFYES GLRLEPGYLG AVLALAELHL MEGRNGDAVS LLERYLKDYA DDSLHVKLAQ VFAATNMLQD
501: SLSHFQAALR INPQNEAAKK GLDRLEKQMK GIDPDATDEN DENDVEDVDG DTEEAELM

Arabidopsis Description

APC7AtAPC7 [Source:UniProtKB/TrEMBL;Acc:A0A178VSZ9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.