Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os10t0575950-01 | Rice | cytosol | 76.29 | 74.75 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 72.16 | 68.63 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 71.13 | 67.65 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 71.13 | 67.65 |
| EER94435 | Sorghum | cytosol | 79.38 | 63.64 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 34.02 | 60.0 |
| KXG34154 | Sorghum | cytosol | 29.9 | 52.73 |
| OQU76519 | Sorghum | extracellular | 60.82 | 41.26 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 45.36 | 39.64 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 35.05 | 39.08 |
| PGSC0003DMT400038358 | Potato | plastid | 40.21 | 36.45 |
| AT1G32310.1 | Thale cress | cytosol | 37.11 | 36.0 |
| KRH39569 | Soybean | cytosol, plastid | 41.24 | 35.71 |
| Solyc08g076580.2.1 | Tomato | cytosol | 41.24 | 35.4 |
| Bra040769.1-P | Field mustard | cytosol | 36.08 | 35.35 |
| KRH74384 | Soybean | cytosol, plastid | 40.21 | 34.21 |
| CDY61823 | Canola | cytosol | 38.14 | 33.95 |
| CDY32305 | Canola | cytosol | 37.11 | 33.03 |
| KXG30734 | Sorghum | extracellular | 48.45 | 29.56 |
Protein Annotations
| EnsemblPlants:OQU80353 | EnsemblPlantsGene:SORBI_3007G115000 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0010997 |
| GO:GO:0040007 | GO:GO:0046621 | InterPro:SAMBA | PANTHER:PTHR37387 | ProteinID:OQU80353 | ProteinID:OQU80353.1 |
| SEG:seg | UniParc:UPI000B8B9C69 | UniProt:A0A1Z5R9A5 | MapMan:35.2 | : | : |
Description
hypothetical protein
Coordinates
chr7:+:49874801..49875385
Molecular Weight (calculated)
10606.5 Da
IEP (calculated)
5.096
GRAVY (calculated)
-0.343
Length
97 amino acids
Sequence
(BLAST)
(BLAST)
1: MSSPTRSTVS AASGGAVSAT EDIADSIDAL YRKDEVMAEL KSEVMEVLLR EVRSLDDDSW MFATPRSRIN LVSSPVLTYP SNTYGKLGQA SKKTRNF
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.