Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY61823 | Canola | cytosol | 96.33 | 96.33 |
| Bra040769.1-P | Field mustard | cytosol | 80.73 | 88.89 |
| AT1G32310.1 | Thale cress | cytosol | 80.73 | 88.0 |
| VIT_05s0124g00450.t01 | Wine grape | plastid | 49.54 | 62.07 |
| KRH39569 | Soybean | cytosol, plastid | 60.55 | 58.93 |
| KRH74384 | Soybean | cytosol, plastid | 55.96 | 53.51 |
| PGSC0003DMT400038358 | Potato | plastid | 49.54 | 50.47 |
| Solyc08g076580.2.1 | Tomato | cytosol | 50.46 | 48.67 |
| TraesCS1D01G197800.1 | Wheat | cytosol | 41.28 | 44.12 |
| TraesCS1B01G208900.1 | Wheat | cytosol | 41.28 | 44.12 |
| TraesCS1A01G193900.1 | Wheat | cytosol | 41.28 | 44.12 |
| GSMUA_Achr5P14060_001 | Banana | nucleus | 43.12 | 42.34 |
| HORVU1Hr1G050750.1 | Barley | cytosol, mitochondrion, plasma membrane | 21.1 | 41.82 |
| Os10t0575950-01 | Rice | cytosol | 37.61 | 41.41 |
| Zm00001d030079_P001 | Maize | cytosol, nucleus, plastid | 33.95 | 40.66 |
| OQU80353 | Sorghum | cytosol | 33.03 | 37.11 |
| KXG34154 | Sorghum | cytosol | 18.35 | 36.36 |
| EER94435 | Sorghum | cytosol | 37.61 | 33.88 |
| OQU76519 | Sorghum | extracellular | 28.44 | 21.68 |
| KXG30734 | Sorghum | extracellular | 26.61 | 18.24 |
Protein Annotations
| EnsemblPlants:CDY32305 | EnsemblPlantsGene:GSBRNA2T00051784001 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0008150 | GO:GO:0010997 |
| GO:GO:0040007 | GO:GO:0046621 | InterPro:SAMBA | PANTHER:PTHR37387 | ProteinID:CDY32305 | ProteinID:CDY32305.1 |
| SEG:seg | UniParc:UPI0004EE0ADE | UniProt:A0A078H0R9 | MapMan:35.1 | : | : |
Description
BnaC05g28830DBnaC05g28830D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H0R9]
Coordinates
chrLK032291:-:439807..440841
Molecular Weight (calculated)
11762.9 Da
IEP (calculated)
5.734
GRAVY (calculated)
-0.513
Length
109 amino acids
Sequence
(BLAST)
(BLAST)
001: MNGASPAHSS VSTTAVAGGG GSSGAAAGLD DFPFPPDIPS MQDRKDEAMR VLKTDLMGEL DKEVKSLEED SWMFQGPRSR IHLISRREGN FLKRDCEAVV
101: KSSTVQLPR
101: KSSTVQLPR
1: MNGASPAHSL VSTTAVAGGG GSSGAAAGLD DFHFPPDIPS MQERKDEAMR VLKADLMTEL DKEVKSLEED SWMFEGPRSR IHLISRRGNF LKKGGEVKLW
Arabidopsis Description
SAMBAProtein SAMBA [Source:UniProtKB/Swiss-Prot;Acc:Q9C613]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.