CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036522.1-P	Field mustard	plastid	95.44	96.54
CDX80466	Canola	plastid	89.16	88.99
AT5G24690.1	Thale cress	plastid	85.17	85.99
VIT_12s0034g01330.t01	Wine grape	cytosol	28.33	71.29
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	58.94	70.78
VIT_12s0034g01370.t01	Wine grape	plastid	69.58	70.25
KRH44019	Soybean	mitochondrion, nucleus, plastid	66.35	67.24
PGSC0003DMT400061143	Potato	plastid	66.35	66.6
Solyc01g104270.2.1	Tomato	plastid	66.16	66.41
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	65.4	65.77
Solyc10g045620.1.1	Tomato	cytosol	41.25	64.01
Os12t0283800-01	Rice	extracellular, plastid	28.33	63.14
Solyc10g045630.1.1	Tomato	plastid	30.61	61.45
Zm00001d041036_P001	Maize	cytosol	40.11	61.34
HORVU7Hr1G082560.2	Barley	mitochondrion	47.91	60.14
EES16982	Sorghum	plastid	55.51	54.28
TraesCS5B01G110100.1	Wheat	golgi	54.75	54.14
TraesCS5A01G110400.1	Wheat	plastid	54.56	53.85
TraesCS7D01G343200.1	Wheat	plastid	50.95	53.82
TraesCS5D01G123000.1	Wheat	plastid	54.56	53.75
TraesCS7A01G335500.1	Wheat	plastid	50.57	53.74
TraesCS7B01G247100.1	Wheat	plastid	50.76	53.61
Zm00001d023791_P002	Maize	plasma membrane	54.18	53.07
HORVU5Hr1G030040.1	Barley	plastid	54.56	52.37
CDX88129	Canola	cytosol	87.45	26.59
CDY27990	Canola	plastid	13.69	22.43
CDY35990	Canola	plastid	13.5	22.05
CDX97204	Canola	plastid	15.21	21.39
CDX70479	Canola	plastid	15.21	21.33
CDY53965	Canola	plastid	14.83	20.58
CDX78491	Canola	plastid	14.64	20.48
CDY26956	Canola	plastid	16.35	20.43
CDX92336	Canola	plastid	16.35	20.33
CDX74930	Canola	plastid	16.35	20.33
CDX91387	Canola	plastid	16.35	20.28
CDY66586	Canola	plastid	13.12	20.18
CDY07766	Canola	plastid	15.78	20.05
CDY22156	Canola	plastid	12.93	19.94
CDY59488	Canola	plastid	15.59	19.57
Os05t0474600-02	Rice	cytosol	15.21	18.43
CDX88782	Canola	plastid	16.16	14.71
CDX71014	Canola	plastid	15.97	14.21
CDX67635	Canola	plastid	19.96	14.13
CDY31998	Canola	plastid	19.96	14.13
CDX93185	Canola	plastid	19.2	13.72
CDY52926	Canola	plastid	19.2	13.59
CDY67668	Canola	mitochondrion	1.33	4.14
Os05t0474500-01	Rice	cytosol	0.19	0.2

Protein Annotations

EnsemblPlants:CDX87117	EnsemblPlantsGene:GSBRNA2T00146021001	GO:A0A078DDJ3	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2
PFAM:PF11891	ProteinID:CDX87117	ProteinID:CDX87117.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE4645
MapMan:35.1	:	:	:	:	:

Description

BnaC09g04320D

Coordinates

chrLK031849:+:566303..570133

Molecular Weight (calculated)

57333.6 Da

IEP (calculated)

8.792

GRAVY (calculated)

-0.177

Length

526 amino acids

Sequence
(BLAST)

001: MSHMVFQSVA APKPCLPIPR STAALPCKLR RVSFVRASSA SLIESVGDSV SGLERCFQLP FSGDASPSSS SISISASSSP TAQMCPVMKG GKFGSVGAVT
101: LEKGKLDMTQ KKVESSPEIA TGGGGGDIGK KINFGGGDGG DDDGDDDDYF DEFDDDDDDG DEGGLFRRRM FLAEIFDRKF VDAVLNEWQK TMLDLPAGLR
201: QAYEMGLVSS AQMVKFLAIN ARPTTTRLIS RALPQGLSRA FVGRMLADPS FLYRLLLEQA ATVGCSVWWE VKTRKNRIKE EWDLALINVL TVSACNAAAV
301: WLLAPSRSYG NTFRFDLQNT LQKLPNNIFE TSYPLREFDL QKRVHSLFYK AAELSILGVA TGAFQGSLSN FLAGKKKNRV SVTVPSVGTN ALGYGAFLGL
401: YANLRYQLLC GFERTMSSHF DVIGVALFFG TAVRIMNVQL GEKSRQIWLG VEADPLAQSD DLLAKAYNRP SSEEGVAKED SRWFISKNAI VSGLLGMKQH
501: DSESSDSPQP PKARRKRIVR KKVAAS

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.