Factsheet for GSMUA_Achr2P05940_001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol, plasma membrane

Predictor Summary:

cytosol 2
mitochondrion 2
extracellular 1
plastid 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_12s0034g01330.t01	Wine grape	cytosol	34.25	71.77
Os12t0283800-01	Rice	extracellular, plastid	35.84	66.53
Zm00001d041036_P001	Maize	cytosol	50.68	64.53
VIT_12s0034g01370.t01	Wine grape	plastid	76.71	64.49
Solyc10g045620.1.1	Tomato	cytosol	48.63	62.83
HORVU7Hr1G082560.2	Barley	mitochondrion	59.59	62.29
KRH44019	Soybean	mitochondrion, nucleus, plastid	73.06	61.66
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	73.29	61.38
Solyc01g104270.2.1	Tomato	plastid	71.69	59.92
CDX80466	Canola	plastid	71.46	59.39
PGSC0003DMT400061143	Potato	plastid	70.78	59.16
Bra036522.1-P	Field mustard	plastid	70.09	59.04
Bra009789.1-P	Field mustard	plastid	71.23	58.98
CDX87117	Canola	plastid	70.78	58.94
AT5G24690.1	Thale cress	plastid	69.86	58.73
TraesCS5B01G110100.1	Wheat	golgi	65.98	54.32
TraesCS5A01G110400.1	Wheat	plastid	65.75	54.03
TraesCS5D01G123000.1	Wheat	plastid	65.53	53.75
EES16982	Sorghum	plastid	65.98	53.72
TraesCS7A01G335500.1	Wheat	plastid	59.59	52.73
TraesCS7D01G343200.1	Wheat	plastid	59.82	52.61
TraesCS7B01G247100.1	Wheat	plastid	59.82	52.61
Zm00001d023791_P002	Maize	plasma membrane	63.7	51.96
HORVU5Hr1G030040.1	Barley	plastid	64.84	51.82
Solyc10g045630.1.1	Tomato	plastid	29.0	48.47
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	13.01	19.66
GSMUA_Achr8P08530_001	Banana	plastid	16.44	19.15
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	9.13	18.69
GSMUA_Achr7P14970_001	Banana	plastid	18.72	18.55
GSMUA_Achr8P01660_001	Banana	plastid	14.61	18.08
CDX88129	Canola	cytosol	71.23	18.03
GSMUA_Achr11P...	Banana	plastid	15.07	17.93
Os05t0474600-02	Rice	cytosol	17.12	17.28
GSMUA_Achr6P35670_001	Banana	plastid	19.41	11.99
GSMUA_AchrUn_...	Banana	plastid	19.63	11.47
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	16.44	10.88
Os05t0474500-01	Rice	cytosol	0.68	0.59

Protein Annotations

MapMan:35.1	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739
GO:GO:0009507	GO:GO:0009536	GO:GO:0009706	GO:GO:0009941	GO:GO:0016020	GO:GO:0016021
EnsemblPlantsGene:GSMUA_Achr2G05940_001	EnsemblPlants:GSMUA_Achr2P05940_001	EnsemblPlants:GSMUA_Achr2T05940_001	UniProt:M0S5I5	PFAM:PF11891	PANTHER:PTHR31038
PANTHER:PTHR31038:SF2	InterPro:RETICULATA-related	TMHMM:TMhelix	UniParc:UPI000296B4DE	SEG:seg	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr2G05940_001]

Coordinates

chr2:-:10844264..10849666

Molecular Weight (calculated)

48832.6 Da

IEP (calculated)

9.157

GRAVY (calculated)

-0.277

Length

438 amino acids

Sequence
(BLAST)

001: MKGGKYGAFG AVTLEKSKLD LSQKTRRTSP ELAVGGGGGD IGKKNFHGGG DGGDDDGDDD DYFDDFDEED DGDEGGLFRR RMVLQELFDR KFVDAVLQEW
101: YKSMINLPAG LRQAYEMGLV SSAQMVRFLT MNARPTVSRA ISRTLPEWLS RAFVGRMIAD PSFLYKLLLE ETMTCACSLW WEFKNRKERM KQEWQLALVN
201: VLTVMTCNGI MVWSLAPCRS YGNTFRFDLE NTIQKLPNNI FENSYPMREF DLQKRVYSFF YKAAEFSLLG LTTGSIQGAL SKAFAAKRDG SKLSVTIPSV
301: STNALGYGAF LGLYANMRYQ LLNGLDRAMV NHFDVLGVAI FFSTALRILN TQLGETSRLA WLGVEANPLL ESENLLKAYN RPSDAVESSS SKWFISKNAI
401: ISGLGLLGLK QGSGEPEATP PKTRRKRIIR KKVNAGSP

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.