Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0283800-01 | Rice | extracellular, plastid | 45.35 | 66.1 |
| EES16982 | Sorghum | plastid | 93.02 | 59.48 |
| Zm00001d023791_P002 | Maize | plasma membrane | 90.41 | 57.91 |
| TraesCS5B01G110100.1 | Wheat | golgi | 86.05 | 55.64 |
| TraesCS5A01G110400.1 | Wheat | plastid | 86.05 | 55.53 |
| TraesCS5D01G123000.1 | Wheat | plastid | 86.05 | 55.43 |
| HORVU5Hr1G030040.1 | Barley | plastid | 84.3 | 52.92 |
| GSMUA_Achr2P05940_001 | Banana | cytosol, extracellular, plasma membrane | 64.53 | 50.68 |
| VIT_12s0034g01330.t01 | Wine grape | cytosol | 26.74 | 44.02 |
| VIT_12s0034g01370.t01 | Wine grape | plastid | 65.12 | 42.99 |
| KRH44019 | Soybean | mitochondrion, nucleus, plastid | 64.83 | 42.97 |
| KRH10440 | Soybean | endoplasmic reticulum, nucleus, plastid | 64.24 | 42.26 |
| PGSC0003DMT400061143 | Potato | plastid | 63.66 | 41.79 |
| Solyc01g104270.2.1 | Tomato | plastid | 63.37 | 41.6 |
| CDX80466 | Canola | plastid | 62.79 | 40.99 |
| Solyc10g045620.1.1 | Tomato | cytosol | 40.12 | 40.71 |
| Bra009789.1-P | Field mustard | plastid | 62.5 | 40.64 |
| AT5G24690.1 | Thale cress | plastid | 61.34 | 40.5 |
| Bra036522.1-P | Field mustard | plastid | 61.05 | 40.38 |
| CDX87117 | Canola | plastid | 61.34 | 40.11 |
| Solyc10g045630.1.1 | Tomato | plastid | 26.16 | 34.35 |
| Zm00001d038085_P001 | Maize | plastid | 18.9 | 16.8 |
| Zm00001d002980_P001 | Maize | plastid | 17.73 | 15.25 |
| Zm00001d042050_P001 | Maize | plastid | 17.73 | 14.7 |
| Zm00001d043119_P001 | Maize | plastid | 14.53 | 14.62 |
| Zm00001d012539_P001 | Maize | extracellular, mitochondrion, plastid | 14.24 | 14.29 |
| Zm00001d019249_P002 | Maize | mitochondrion, plastid | 18.02 | 13.96 |
| CDX88129 | Canola | cytosol | 62.5 | 12.43 |
| Zm00001d043023_P002 | Maize | plastid | 19.19 | 8.94 |
| Zm00001d010606_P004 | Maize | plastid | 16.28 | 8.71 |
Protein Annotations
| EnsemblPlants:Zm00001d041036_P001 | EnsemblPlants:Zm00001d041036_T001 | EnsemblPlantsGene:Zm00001d041036 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:RETICULATA-related | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF2 | PFAM:PF11891 | ProteinID:ONM32291.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI00084320F9 | UniProt:A0A1D6MTS6 | MapMan:35.2 | : | : |
Description
Protein RETICULATA-RELATED 3 chloroplastic
Coordinates
chr3:-:92302528..92325633
Molecular Weight (calculated)
38371.9 Da
IEP (calculated)
8.450
GRAVY (calculated)
-0.281
Length
344 amino acids
Sequence
(BLAST)
(BLAST)
001: MLATGGGGGD IGKRIGHGGG DGGDDDGDDD DYFDDFDEGE EEGGLFRRRI VVQELFNREF VEAVLQEWYK TMSDLPTGLR QACEMGLVSS AQMVRYLSIF
101: ARPTNARSFS RALPGWLSRG LVGRTLADPS FPHKMSLEFI ATIASSIWCE MNIRKERFKQ EWDLVIVNAL TAACCNLMVL GLLAPCRSYA STSRFDFQNA
201: IEKLPNNIFE KSYPLREFDL AKRISAFFYK AAELSLVGFV AGSVQGGMSI VLSARKERRL MNIQIGEASR RTWLGEEADP QYSDRLLRAY KRPVEVDADQ
301: SRWFISKDAI VSGLGLLGIK QGGPEATFSK SRRKRVIRKK VTSG
101: ARPTNARSFS RALPGWLSRG LVGRTLADPS FPHKMSLEFI ATIASSIWCE MNIRKERFKQ EWDLVIVNAL TAACCNLMVL GLLAPCRSYA STSRFDFQNA
201: IEKLPNNIFE KSYPLREFDL AKRISAFFYK AAELSLVGFV AGSVQGGMSI VLSARKERRL MNIQIGEASR RTWLGEEADP QYSDRLLRAY KRPVEVDADQ
301: SRWFISKDAI VSGLGLLGIK QGGPEATFSK SRRKRVIRKK VTSG
001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
Arabidopsis Description
AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.