Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU75601 | Sorghum | cytosol, mitochondrion, plasma membrane | 17.25 | 93.24 |
| EES11134 | Sorghum | plastid | 84.75 | 85.39 |
| Os04t0524400-01 | Rice | plastid | 77.75 | 77.94 |
| TraesCS2B01G394800.1 | Wheat | golgi, plastid | 75.0 | 76.34 |
| TraesCS2D01G374200.1 | Wheat | plastid | 75.0 | 76.34 |
| TraesCS2A01G377800.1 | Wheat | plastid | 73.75 | 75.26 |
| HORVU2Hr1G090260.1 | Barley | plastid | 73.0 | 71.57 |
| Solyc09g011340.2.1 | Tomato | plastid | 58.0 | 54.21 |
| PGSC0003DMT400062339 | Potato | mitochondrion | 58.25 | 54.19 |
| Os03t0390900-01 | Rice | plastid | 26.5 | 50.96 |
| Zm00001d019249_P002 | Maize | mitochondrion, plastid | 55.0 | 49.55 |
| GSMUA_Achr8P13730_001 | Banana | extracellular, plasma membrane | 63.25 | 38.22 |
| Zm00001d038085_P001 | Maize | plastid | 24.25 | 25.06 |
| Zm00001d042050_P001 | Maize | plastid | 25.25 | 24.34 |
| Zm00001d043119_P001 | Maize | plastid | 19.0 | 22.22 |
| Zm00001d012539_P001 | Maize | extracellular, mitochondrion, plastid | 19.0 | 22.16 |
| Zm00001d041036_P001 | Maize | cytosol | 15.25 | 17.73 |
| Zm00001d023791_P002 | Maize | plasma membrane | 20.25 | 15.08 |
| Zm00001d043023_P002 | Maize | plastid | 23.0 | 12.47 |
| Zm00001d010606_P004 | Maize | plastid | 19.25 | 11.98 |
Protein Annotations
| EnsemblPlants:Zm00001d002980_P001 | EnsemblPlants:Zm00001d002980_T001 | EnsemblPlantsGene:Zm00001d002980 | EntrezGene:100277077 | GO:GO:0005575 | GO:GO:0016020 |
| GO:GO:0016021 | InterPro:RETICULATA-related | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF8 | PFAM:PF11891 | ProteinID:ONM15840.1 |
| SEG:seg | TMHMM:TMhelix | UniParc:UPI0008444E49 | UniProt:A0A1D6E5U7 | MapMan:35.1 | : |
Description
Protein RETICULATA chloroplastic
Coordinates
chr2:-:28748575..28751333
Molecular Weight (calculated)
42447.1 Da
IEP (calculated)
6.257
GRAVY (calculated)
0.170
Length
400 amino acids
Sequence
(BLAST)
(BLAST)
001: MAFAASPSLS ALASSSSSTA AAPTPSSNPL HEPRPLHLSL KPVLPLPKPH ALSCSAPHIP RAAAGDGSGV GNGGKDGGGG GGGEDEDDCD DADFGPLLGF
101: NEVLHLAAAR GVALPGDMLE AAKDAGIREV LLLRYFDLQV LEFQGICMED SNVAVFSHSF DIDLQAAPWP LGVLIRAFSM LRNRMLADPS FLFKVSTEVD
201: AIEVQKRGKD FWAEFELYAA DLLVGVAVDI ALVGLLAPYV RIGKPSASTG LFGRFSRMAG SLPSSVFEAE RPGCRFTAQQ RIGTYFYKGV LYGSVGFVCG
301: IIGQGIANMI MTAKRSVKKS DEDIPVPPLV KSAALWGVFL AVSSNTRYQI INGLERVVEA SPVARRVPPV AMAFTVGVRF ANNIYGGMQF VDWARWSGVQ
101: NEVLHLAAAR GVALPGDMLE AAKDAGIREV LLLRYFDLQV LEFQGICMED SNVAVFSHSF DIDLQAAPWP LGVLIRAFSM LRNRMLADPS FLFKVSTEVD
201: AIEVQKRGKD FWAEFELYAA DLLVGVAVDI ALVGLLAPYV RIGKPSASTG LFGRFSRMAG SLPSSVFEAE RPGCRFTAQQ RIGTYFYKGV LYGSVGFVCG
301: IIGQGIANMI MTAKRSVKKS DEDIPVPPLV KSAALWGVFL AVSSNTRYQI INGLERVVEA SPVARRVPPV AMAFTVGVRF ANNIYGGMQF VDWARWSGVQ
001: MSISLKISHI SSFSNDGFNS VKQCRVSQRF EIRSVCFRRS PGVESRRIHL NSDLSSRNLR NRCVGSDVVT GEISGRSIPD WAYSGVKDET LSDLEPELDD
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
101: GDGGDENGNN DGGGNGGNGD GGGGGGDGEG DDGEDEADKA EEKEFGPILK FEEVMKETER RGITLPEDML EAAKSVGIRK LFLLRYLDLQ GSVWPLGFLM
201: RSCAMLRNRM LADPSFLFKV GTEVAIDSCC ATFAEVQKRG EDFWSEFELY AADLLVGLVV DVALVGLLAP YARIGKPSVA STGLFKDLKR ACASLPSSVF
301: EAERPGCKFS VNQRIATFFY KGLLYGSVGF GCGLIGQGIA NLIMTAKRSV KKSEEDVPIP PLFESAALWG VFLGLSSNAR YQIINGLERV VEGSTAAKRI
401: PVVAMAFTVG VRFANNVYGG MQFVDWAKLS GVQ
Arabidopsis Description
RER1Protein RETICULATA-RELATED 1, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9FGP9]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.