Factsheet for HORVU2Hr1G090260.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 3
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	mitochondrion
TargetP:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G394800.1	Wheat	golgi, plastid	90.93	94.4
TraesCS2D01G374200.1	Wheat	plastid	90.69	94.15
TraesCS2A01G377800.1	Wheat	plastid	89.71	93.37
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	15.93	87.84
Os04t0524400-01	Rice	plastid	79.9	81.7
EES11134	Sorghum	plastid	77.45	79.6
Zm00001d002980_P001	Maize	plastid	71.57	73.0
Os03t0390900-01	Rice	plastid	30.64	60.1
HORVU2Hr1G049760.6	Barley	cytosol, peroxisome	49.02	56.18
PGSC0003DMT400062339	Potato	mitochondrion	58.58	55.58
Solyc09g011340.2.1	Tomato	plastid	58.09	55.37
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	61.03	37.61
HORVU0Hr1G000510.2	Barley	cytosol	15.69	28.07
HORVU3Hr1G109880.1	Barley	plastid	23.77	24.94
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	19.85	19.52
HORVU7Hr1G082560.2	Barley	mitochondrion	18.38	17.9
HORVU5Hr1G030040.1	Barley	plastid	21.57	16.06
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	24.26	13.52
HORVU5Hr1G020100.2	Barley	cytosol	5.15	8.94
HORVU1Hr1G070330.11	Barley	cytosol	22.06	7.5

Protein Annotations

EnsemblPlants:HORVU2Hr1G090260.1	EnsemblPlantsGene:HORVU2Hr1G090260	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31038	PANTHER:PTHR31038:SF8	PFAM:PF11891	SEG:seg	TMHMM:TMhelix	UniParc:UPI000B477F34
UniProt:A0A287IW55	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chrchr2H:-:643153205..643156205

Molecular Weight (calculated)

43111.1 Da

IEP (calculated)

8.821

GRAVY (calculated)

0.113

Length

408 amino acids

Sequence
(BLAST)

001: KRGLKLEGGE KNNLKPQFAT MASASASLSS LASSAAAAAI SSGPGCPPSK PLRDLKPLHL SVRLFSRLGK PQSLSCSGPL APRAATGDGS GAGNRGDDSG
101: GNGGKGGGGN DGDEDYEEAE FGPLLGFSEV VRLAAARGVT LPADMIEAAK DAGIREVILL RYFDLQAAPW PLAAMVRAFS VLRNRMLADP SFLFKVGIEV
201: VIDSCCATLA EVQKRGEDFW AEFELYAADI LIGIVVDIAL VGMLAPYVRL GKASASTGLL GRFNRMTGAL PSSVFEAERP GCRFTVQQRI GTYFYKGVLY
301: GSVGFFCGII GQGICNMIMN AKRSVKKTDE DIPVPPLIKS AALWGVFLAV SSNTRYQIIN GLERVVEASP VAKGAPPVAM AFTVGVRFAN NIYGGMQFID
401: WARWSGVQ

Best Arabidopsis Sequence Match ( AT2G37860.3 )
(BLAST)

001: MAGCAMNLQF SSVVKVRNEI SSFGICNRDF VFRDLAKAMK VPVLRIRGGS GRQRSRLFVV NMSQSPIEPQ SGGFAATEQI KGEGDNSILG KDNVRNLGTD
101: QLENLDIDGN VGDGFNGSDG NGGGGGGGNG GEGDGEGEDY EEKEFGPILK FEEVMKETEA RGATLPSDML EAAKNYGIRK VLLLRYLDLQ SSAGLLGFAI
201: RSWAMLRNRM LADPSFLFKI GAEIVIDSCC ATVAEVQKRG KDFWAEFELY VADLLVGTVV NIALVGMLAP YVRFGQPSAS PGFLGRMVFA YNALPSSVFE
301: AERPGCRFSA QQRLATYFYK GIMYGAVGFG CGIVGQGIAN LIMTAKRNIN KSEENIPVPP LIKSAALWGV FLSVSSNTRY QIINGLERVV EASPFAKKFP
401: PAAMAFTVGV RLANNIYGGM QFVDWARLSG CQ

Arabidopsis Description

REProtein RETICULATA, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:B9DFK5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.