Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, plastid
Predictor Summary:
Predictor Summary:
- plastid 3
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3B01G368200.1 | Wheat | golgi, plastid, unclear | 76.63 | 91.12 |
| TraesCS3A01G337100.1 | Wheat | golgi, plastid, unclear | 76.14 | 89.52 |
| TraesCS3D01G330200.1 | Wheat | plastid | 76.14 | 89.01 |
| KXG33587 | Sorghum | plastid | 65.78 | 79.59 |
| Zm00001d043119_P001 | Maize | plastid | 65.3 | 79.24 |
| Os01t0812900-01 | Rice | plastid | 64.1 | 76.44 |
| Zm00001d012539_P001 | Maize | extracellular, mitochondrion, plastid | 62.89 | 76.09 |
| EES13002 | Sorghum | mitochondrion, plastid | 44.1 | 74.09 |
| Bra040052.1-P | Field mustard | golgi, plasma membrane, plastid | 37.35 | 63.01 |
| Solyc09g031940.1.1 | Tomato | plastid | 47.71 | 55.46 |
| PGSC0003DMT400016786 | Potato | plastid | 47.23 | 55.21 |
| CDY27990 | Canola | plastid | 42.17 | 54.52 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 37.59 | 53.79 |
| CDY35990 | Canola | plastid | 41.69 | 53.73 |
| KRH00511 | Soybean | endoplasmic reticulum | 44.82 | 53.6 |
| Bra029704.1-P | Field mustard | plastid | 41.45 | 53.58 |
| KRH40643 | Soybean | mitochondrion | 45.06 | 53.58 |
| KRH09563 | Soybean | plastid | 40.96 | 53.12 |
| AT3G08640.1 | Thale cress | plastid | 42.89 | 52.82 |
| AT3G08630.1 | Thale cress | plastid | 42.65 | 52.21 |
| Solyc10g074880.1.1 | Tomato | plastid | 44.82 | 51.81 |
| CDY22156 | Canola | plastid | 42.41 | 51.61 |
| PGSC0003DMT400071250 | Potato | plastid | 44.82 | 51.1 |
| VIT_08s0056g00560.t01 | Wine grape | plastid | 42.89 | 50.71 |
| CDY66586 | Canola | plastid | 41.45 | 50.29 |
| GSMUA_Achr11P... | Banana | plastid | 43.61 | 49.18 |
| GSMUA_Achr8P01660_001 | Banana | plastid | 39.76 | 46.61 |
| HORVU0Hr1G000510.2 | Barley | cytosol | 13.49 | 24.56 |
| HORVU2Hr1G049760.6 | Barley | cytosol, peroxisome | 19.04 | 22.19 |
| HORVU3Hr1G109880.1 | Barley | plastid | 20.0 | 21.34 |
| HORVU2Hr1G090260.1 | Barley | plastid | 19.52 | 19.85 |
| HORVU7Hr1G082560.2 | Barley | mitochondrion | 16.14 | 15.99 |
| HORVU3Hr1G088220.12 | Barley | mitochondrion, plastid | 22.41 | 12.7 |
| HORVU5Hr1G030040.1 | Barley | plastid | 16.63 | 12.59 |
| HORVU5Hr1G020100.2 | Barley | cytosol | 4.34 | 7.66 |
| HORVU1Hr1G070330.11 | Barley | cytosol | 20.24 | 7.0 |
Protein Annotations
| EnsemblPlants:HORVU3Hr1G079620.1 | EnsemblPlantsGene:HORVU3Hr1G079620 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:RETICULATA-related |
| PANTHER:PTHR31620 | PANTHER:PTHR31620:SF5 | PFAM:PF11891 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B47967F |
| UniProt:A0A287LUP5 | MapMan:35.1 | : | : | : | : |
Description
No Description!
Coordinates
chrchr3H:-:584332809..584334545
Molecular Weight (calculated)
43084.2 Da
IEP (calculated)
11.405
GRAVY (calculated)
0.065
Length
415 amino acids
Sequence
(BLAST)
(BLAST)
001: GGPVALQPSR PVGQVSRCRA RHVYILRRAP TPHRTTAPHR HQPPPKPPLH LAPLRRRRRE TPSFSPRSIA MAAPTAFTAA RFLSSAHLDS SGRFAPLRAA
101: PTANLAFSPL PASSSSALLA LRSASPSPSG PGGRLPPPPP PRSYGGGGGG SGDAADSGSS GGDGGRAGIL GMFFAGWAAR VAADPQFPFK VLMEELVGVT
201: ACVLGDMSSR PNFGLNELDF VFSTLVVGSI LNFVLMYMLA PTAGVSAAVS SLPSHMFEPG AYSLGSRFAT LVSKGTTFAA VGFGAGLMGT AISNGLIAMR
301: KRMDPAFETP NKPPPTLLNA GTWALHMGVS SNLRYQSLNG IEFLLGNVMP APVFKVSVIA LRCINNVLGG MSFVMLARLT GAQKSDKPAA SVPEAKERLI
401: AEGDVIAANV STEGK
101: PTANLAFSPL PASSSSALLA LRSASPSPSG PGGRLPPPPP PRSYGGGGGG SGDAADSGSS GGDGGRAGIL GMFFAGWAAR VAADPQFPFK VLMEELVGVT
201: ACVLGDMSSR PNFGLNELDF VFSTLVVGSI LNFVLMYMLA PTAGVSAAVS SLPSHMFEPG AYSLGSRFAT LVSKGTTFAA VGFGAGLMGT AISNGLIAMR
301: KRMDPAFETP NKPPPTLLNA GTWALHMGVS SNLRYQSLNG IEFLLGNVMP APVFKVSVIA LRCINNVLGG MSFVMLARLT GAQKSDKPAA SVPEAKERLI
401: AEGDVIAANV STEGK
001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
Arabidopsis Description
RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.