CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY66586	Canola	plastid	97.65	97.37
AT3G08640.1	Thale cress	plastid	79.18	80.12
CDY27990	Canola	plastid	73.02	77.57
CDY35990	Canola	plastid	72.43	76.71
EES13002	Sorghum	mitochondrion, plastid	42.52	58.7
KRH09563	Soybean	plastid	53.96	57.5
VIT_08s0056g00560.t01	Wine grape	plastid	58.65	56.98
Solyc09g031940.1.1	Tomato	plastid	58.06	55.46
PGSC0003DMT400016786	Potato	plastid	57.48	55.21
PGSC0003DMT400071250	Potato	plastid	57.77	54.12
Os01t0812900-01	Rice	plastid	54.84	53.74
Solyc10g074880.1.1	Tomato	plastid	56.3	53.48
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	44.87	52.76
KXG33587	Sorghum	plastid	52.79	52.48
Zm00001d043119_P001	Maize	plastid	52.49	52.34
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	52.2	51.9
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	51.91	50.72
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	52.49	50.71
TraesCS3D01G330200.1	Wheat	plastid	52.2	50.14
GSMUA_Achr11P...	Banana	plastid	53.08	49.18
GSMUA_Achr8P01660_001	Banana	plastid	51.03	49.15
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	51.61	42.41
CDX97204	Canola	plastid	26.1	23.8
CDX70479	Canola	plastid	26.1	23.73
CDX78491	Canola	plastid	25.81	23.4
CDY53965	Canola	plastid	25.81	23.22
CDY26956	Canola	plastid	26.69	21.62
CDX92336	Canola	plastid	26.39	21.28
CDX74930	Canola	plastid	24.93	20.09
CDX91387	Canola	plastid	24.93	20.05
CDY59488	Canola	plastid	23.17	18.85
CDY07766	Canola	plastid	22.87	18.84
CDX88782	Canola	plastid	24.63	14.53
CDX71014	Canola	plastid	24.93	14.38
CDX87117	Canola	plastid	19.94	12.93
CDX80466	Canola	plastid	19.65	12.71
CDX67635	Canola	plastid	24.93	11.44
CDY31998	Canola	plastid	24.63	11.31
CDX93185	Canola	plastid	23.75	11.01
CDY52926	Canola	plastid	23.75	10.9
CDX88129	Canola	cytosol	19.35	3.82
CDY67668	Canola	mitochondrion	1.47	2.96

Protein Annotations

EnsemblPlants:CDY22156	EnsemblPlantsGene:GSBRNA2T00018555001	GO:A0A078G9U0	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:CDY22156	ProteinID:CDY22156.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE8768	UniProt:A0A078G9U0	MapMan:35.1	:

Description

BnaC01g39450DBnaC01g39450D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G9U0]

Coordinates

chrLK032128:+:232694..234066

Molecular Weight (calculated)

35643.3 Da

IEP (calculated)

8.752

GRAVY (calculated)

0.169

Length

341 amino acids

Sequence
(BLAST)

001: MAAIARLHLS AKSNPNLPPP RAINLSRDPR IAVSFPRSGS VCSLHTNFSS PNLPIPCAGG GGGGGGGNFG NPPSGGGGGG GGAEEEGSSS SSWGPIGMFI
101: EGWRSRVAAD PQFPFKVLME ELVGVTACVL GDMASRPNFG LNELDFVFST LVVGSILNFM LMYLLAPTSA TAGVSQSLPG IFRNCPSGHM FEQGGFTVMN
201: RFGTLVYKGM VFATVGLAAG LVGTAISNGL IMLRKKMDPG FETPNKPPPT VLNSLTWATH MGVSANVRYQ TLNGVEFLLA KAMPPVVFKT SVFVLRCVNN
301: VVGGMSFVLL ARMTGSQSVE GKSEVGVEEE KTEVHVKVKD V

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.