CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043119_P001	Maize	plastid	93.88	94.15
EES13002	Sorghum	mitochondrion, plastid	62.1	86.23
Os01t0812900-01	Rice	plastid	83.09	81.9
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	81.92	80.52
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	81.63	79.32
TraesCS3D01G330200.1	Wheat	plastid	81.92	79.15
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	79.59	65.78
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	46.06	64.23
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	47.23	55.86
CDY27990	Canola	plastid	51.6	55.14
CDY35990	Canola	plastid	51.31	54.66
PGSC0003DMT400016786	Potato	plastid	56.56	54.65
Bra029704.1-P	Field mustard	plastid	51.02	54.52
Solyc09g031940.1.1	Tomato	plastid	56.27	54.06
KRH00511	Soybean	endoplasmic reticulum	53.64	53.03
CDY22156	Canola	plastid	52.48	52.79
AT3G08640.1	Thale cress	plastid	51.6	52.52
KRH40643	Soybean	mitochondrion	53.35	52.44
VIT_08s0056g00560.t01	Wine grape	plastid	53.64	52.42
AT3G08630.1	Thale cress	plastid	51.6	52.21
PGSC0003DMT400071250	Potato	plastid	54.81	51.65
KRH09563	Soybean	plastid	48.1	51.56
Solyc10g074880.1.1	Tomato	plastid	53.94	51.53
CDY66586	Canola	plastid	51.31	51.46
GSMUA_Achr11P...	Banana	plastid	53.35	49.73
GSMUA_Achr8P01660_001	Banana	plastid	48.69	47.18
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	5.54	25.68
EES18163	Sorghum	plastid	24.78	20.58
EES11134	Sorghum	plastid	22.16	19.14
KXG34151	Sorghum	plastid	23.03	18.9
EER98239	Sorghum	plastid	23.03	18.12
EES16982	Sorghum	plastid	20.99	13.38
KXG22205	Sorghum	plastid	25.66	11.86
EES03820	Sorghum	mitochondrion	25.07	11.72

Protein Annotations

EnsemblPlants:KXG33587	EnsemblPlantsGene:SORBI_3003G332000	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:KXG33587	ProteinID:KXG33587.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI00081ACD3C	UniProt:A0A1B6Q6Q2	MapMan:35.1	:	:

Description

hypothetical protein

Coordinates

chr3:-:65653703..65656064

Molecular Weight (calculated)

35166.6 Da

IEP (calculated)

10.174

GRAVY (calculated)

0.225

Length

343 amino acids

Sequence
(BLAST)

001: MASTAFAAAK FFPAHLDSSP RIAPHRAAPT ANLTFSPLSA NSSSLLRLRS PCPSGPGGRL PPPPPPRSYG GSGDAAGSGG SGDGGRRGGI LGLFLAGWAA
101: RVAADPQFPF KVLMEELVGV TACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYLL APTAGVAAAA SSAAKALPSH MFEPGPYSLG SRVATIMSKG
201: ATFAVVGFAA GLAGTAISNG LIAMRKRMDP AFETPNKAPP TLLNAATWAL HMGVSSNLRY QTLNGVEYLL GKVAPAPVFK VSVVALRCMN NVLGGMSFVL
301: LARLTGAQKS DKPATVAEEK ERLIAVGNAA ADAINEARDG EGK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.