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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion

Predictor Summary:
  • plastid 8
  • mitochondrion 2
Predictors GFP MS/MS Papers
Winner Takes All:mitochondrion
Any Predictor:mitochondrion, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:mitochondrion
MultiLoc:mitochondrion
Plant-mPloc:plastid
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 endoplasmic reticulum: 27224218
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH00511 Soybean endoplasmic reticulum 95.13 95.68
KRH09563 Soybean plastid 56.73 61.88
EES13002 Sorghum mitochondrion, plastid 43.55 61.54
VIT_08s0056g00560.t01 Wine grape plastid 61.03 60.68
PGSC0003DMT400016786 Potato plastid 58.45 57.46
Solyc09g031940.1.1 Tomato plastid 58.74 57.42
PGSC0003DMT400071250 Potato plastid 59.89 57.42
Solyc10g074880.1.1 Tomato plastid 58.74 57.1
Zm00001d012539_P001 Maize extracellular, mitochondrion, plastid 55.01 55.98
Os01t0812900-01 Rice plastid 54.44 54.6
GSMUA_Achr10P... Banana cytosol, nucleus, plastid 45.27 54.48
Zm00001d043119_P001 Maize plastid 53.01 54.09
TraesCS3B01G368200.1 Wheat golgi, plastid, unclear 53.87 53.87
KXG33587 Sorghum plastid 52.44 53.35
TraesCS3A01G337100.1 Wheat golgi, plastid, unclear 53.87 53.26
TraesCS3D01G330200.1 Wheat plastid 53.87 52.96
GSMUA_Achr11P... Banana plastid 55.3 52.45
GSMUA_Achr8P01660_001 Banana plastid 51.29 50.56
HORVU3Hr1G079620.1 Barley mitochondrion, plastid 53.58 45.06
KRH39906 Soybean mitochondrion, plastid 25.5 23.67
KRH23903 Soybean nucleus, plastid 24.93 23.39
KRH24069 Soybean endoplasmic reticulum, mitochondrion 24.36 23.35
KRH29040 Soybean endoplasmic reticulum 23.78 22.55
KRH22744 Soybean plastid 24.07 21.76
KRH26562 Soybean plastid 23.5 21.35
KRG88973 Soybean plastid 23.78 21.12
KRH49190 Soybean endoplasmic reticulum 26.36 20.77
KRH00055 Soybean plastid 25.21 19.78
KRH33749 Soybean plastid 14.9 18.25
KRH44019 Soybean mitochondrion, nucleus, plastid 20.34 13.68
KRH10440 Soybean endoplasmic reticulum, nucleus, plastid 20.06 13.38
KRH31203 Soybean plastid 25.5 11.9
KRG97671 Soybean plastid 25.21 11.78
Protein Annotations
EMBL:ACUP02006044EnsemblPlants:KRH40643EnsemblPlantsGene:GLYMA_09G271800EntrezGene:100798978GO:GO:0005575GO:GO:0016020
GO:GO:0016021InterPro:RETICULATA-relatedPANTHER:PTHR31620PANTHER:PTHR31620:SF5PFAM:PF11891ProteinID:KRH40643
ProteinID:KRH40643.1SEG:segTMHMM:TMhelixUniParc:UPI000189D719UniProt:A0A0R0IJV1MapMan:35.1
Description
hypothetical protein
Coordinates
chr9:+:48843638..48845692
Molecular Weight (calculated)
36938.9 Da
IEP (calculated)
8.476
GRAVY (calculated)
0.070
Length
349 amino acids
Sequence
(BLAST)
001: MAAMAMLRLS PLSGQNHVLS FPSSPSPPPP KLHNRPLYLT NLPHLPQRLK LSFAGGAGGD GVGRGGGSGG GGGGGESWGD DDGKSKDSSL GILGLFLNGW
101: RSRVAADPQF PFKVLMEELV GVSACVLGDM ASRPNFGLNE LDFVFSTLVV GAILNFTLMY LLAPTMTSSA SNLPALFASC PKSHMFEPGA FSLLDRLGTL
201: VYKGTIFSVV GFGAGLVGTT LSNGLIKMRK KMDPTFETPN KPPPTILNAL TWAAHMGISS NLRYQTLNGV EFMLERVLNP LAFKSSVLVL RCVNNVLGGM
301: SFVVLARLTG AQSVGGEQKE NEVALIAEKE KVVESEREEG LQNNQSTAP
Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)
001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD
Arabidopsis Description
RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.