CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid

Predictor Summary:

plastid 4
mitochondrion 2
golgi 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, plastid
Any Predictor:	mitochondrion, plastid, secretory
BaCelLo:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Plant-mPloc:	golgi
Predotar:	secretory
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG33587	Sorghum	plastid	86.23	62.1
Zm00001d043119_P001	Maize	plastid	84.21	60.82
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	56.28	56.5
Os01t0812900-01	Rice	plastid	77.73	55.17
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	76.11	53.87
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	76.52	53.54
TraesCS3D01G330200.1	Wheat	plastid	76.52	53.24
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	60.73	51.72
PGSC0003DMT400016786	Potato	plastid	65.59	45.63
Solyc09g031940.1.1	Tomato	plastid	65.18	45.1
Bra029704.1-P	Field mustard	plastid	57.89	44.55
CDY27990	Canola	plastid	57.89	44.55
CDY35990	Canola	plastid	57.89	44.41
VIT_08s0056g00560.t01	Wine grape	plastid	62.75	44.16
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	74.09	44.1
KRH00511	Soybean	endoplasmic reticulum	61.54	43.8
KRH40643	Soybean	mitochondrion	61.54	43.55
KRH09563	Soybean	plastid	56.28	43.44
AT3G08640.1	Thale cress	plastid	58.7	43.03
Solyc10g074880.1.1	Tomato	plastid	62.35	42.9
CDY22156	Canola	plastid	58.7	42.52
AT3G08630.1	Thale cress	plastid	58.3	42.48
GSMUA_Achr8P01660_001	Banana	plastid	60.32	42.09
PGSC0003DMT400071250	Potato	plastid	61.94	42.03
CDY66586	Canola	plastid	57.89	41.81
GSMUA_Achr11P...	Banana	plastid	59.92	40.22
OQU75601	Sorghum	cytosol, mitochondrion, plasma membrane	6.88	22.97
EES18163	Sorghum	plastid	27.94	16.71
EES11134	Sorghum	plastid	25.91	16.12
EER98239	Sorghum	plastid	26.32	14.91
KXG34151	Sorghum	plastid	24.29	14.35
EES16982	Sorghum	plastid	21.46	9.85
KXG22205	Sorghum	plastid	28.74	9.57
EES03820	Sorghum	mitochondrion	27.13	9.13

Protein Annotations

EnsemblPlants:EES13002	EnsemblPlantsGene:SORBI_3006G247600	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:EES13002	ProteinID:EES13002.1	RefSeq:XP_002448674.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0001A874AC	UniProt:C5Y9I4	MapMan:35.1	:

Description

hypothetical protein

Coordinates

chr6:-:58698872..58699671

Molecular Weight (calculated)

26427.8 Da

IEP (calculated)

10.336

GRAVY (calculated)

0.374

Length

247 amino acids

Sequence
(BLAST)

001: MSGEPPQIRR RLPCFSPSLP ATLKYDGGRR GAILGLFLAG WATRVAADPQ FPFKVLMEEL VGVTTCVIAD MASRPNFGLN ELDFVFSTLV VGSILNFVLM
101: YLLTPTVGPY SLGSRVATIM SKGAVGVVVG FAAGFTGTAI SNGLIAMRKR MDPAFETPNK APPMLLNAAT WALHMGVSSN LRYQTLNGVE YLLGKVAPAP
201: VFKVSVVALH CMNNMLGGMS FVLLARLTGA QKSDKTATIA KEKERLI

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.