Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 8
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT3G08640.1 | Thale cress | plastid | 83.78 | 84.27 |
| CDY35990 | Canola | plastid | 74.34 | 78.26 |
| Bra029704.1-P | Field mustard | plastid | 74.04 | 78.19 |
| CDY27990 | Canola | plastid | 74.04 | 78.19 |
| EES13002 | Sorghum | mitochondrion, plastid | 42.48 | 58.3 |
| KRH09563 | Soybean | plastid | 54.28 | 57.5 |
| VIT_08s0056g00560.t01 | Wine grape | plastid | 58.11 | 56.13 |
| PGSC0003DMT400016786 | Potato | plastid | 58.7 | 56.06 |
| Solyc09g031940.1.1 | Tomato | plastid | 59.0 | 56.02 |
| PGSC0003DMT400071250 | Potato | plastid | 59.59 | 55.49 |
| Solyc10g074880.1.1 | Tomato | plastid | 58.11 | 54.87 |
| GSMUA_Achr10P... | Banana | cytosol, nucleus, plastid | 45.72 | 53.45 |
| Os01t0812900-01 | Rice | plastid | 54.87 | 53.45 |
| Zm00001d043119_P001 | Maize | plastid | 52.21 | 51.75 |
| KXG33587 | Sorghum | plastid | 52.21 | 51.6 |
| Zm00001d012539_P001 | Maize | extracellular, mitochondrion, plastid | 51.03 | 50.44 |
| TraesCS3B01G368200.1 | Wheat | golgi, plastid, unclear | 51.62 | 50.14 |
| TraesCS3A01G337100.1 | Wheat | golgi, plastid, unclear | 52.21 | 50.14 |
| TraesCS3D01G330200.1 | Wheat | plastid | 52.21 | 49.86 |
| GSMUA_Achr11P... | Banana | plastid | 53.98 | 49.73 |
| GSMUA_Achr8P01660_001 | Banana | plastid | 50.44 | 48.31 |
| HORVU3Hr1G079620.1 | Barley | mitochondrion, plastid | 52.21 | 42.65 |
| AT5G12470.1 | Thale cress | plastid | 24.78 | 21.76 |
| AT5G22790.1 | Thale cress | plastid | 25.66 | 20.09 |
| AT2G37860.4 | Thale cress | plastid | 24.19 | 18.98 |
| AT5G24690.1 | Thale cress | plastid | 23.3 | 15.16 |
| AT2G40400.1 | Thale cress | plastid | 26.25 | 12.11 |
| AT3G56140.1 | Thale cress | plastid | 24.78 | 11.28 |
Protein Annotations
| MapMan:35.1 | EntrezGene:820010 | UniProt:A0A178V8Q9 | ProteinID:AAG51344.1 | ProteinID:AEE74655.1 | EMBL:AK228104 |
| ArrayExpress:AT3G08630 | EnsemblPlantsGene:AT3G08630 | RefSeq:AT3G08630 | TAIR:AT3G08630 | RefSeq:AT3G08630-TAIR-G | EnsemblPlants:AT3G08630.1 |
| TAIR:AT3G08630.1 | Unigene:At.17599 | EMBL:BT012218 | EMBL:BT012416 | ncoils:Coil | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031969 | RefSeq:NP_187475.1 | ProteinID:OAP02627.1 |
| PFAM:PF11891 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 |
| PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 |
| PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 |
| PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF5 | UniProt:Q9C9Z3 | InterPro:RETICULATA-related | TMHMM:TMhelix |
| UniParc:UPI000009C6CE | SEG:seg | : | : | : | : |
Description
RER2Protein RETICULATA-RELATED 2, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z3]
Coordinates
chr3:+:2620713..2622220
Molecular Weight (calculated)
35952.5 Da
IEP (calculated)
8.699
GRAVY (calculated)
0.062
Length
339 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAMAAKLHI STKSDQSNVR LPRLINLSRD PTARVLFPRN GSVSSLHTNF SSPNIMVPCA GGGGGGSIGN HGGGSGSGGG GGGYGGSEEE ESSPWGPLGL
101: FIQGWRSRVA ADSQFPFKVL MEMLVGVSAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AISHGSSNLL PGIFRSCPSS HMFEQGNFTL
201: MNRFGTLVYK GMVFATVGLA AGLVGTAISN GLIMLRKKID PSFETPNKPP PTLLNSLTWA THMGVSANVR YQTLNGAEFL LEKSLPPLVF KTSVIALRVV
301: NNVLGGMSFV TLARMTGSQS VEEEKKIEMS EISEKEKED
101: FIQGWRSRVA ADSQFPFKVL MEMLVGVSAN VLGDMASRPN FGLNELDFVF STLVVGSILN FTLMYLLAPS AISHGSSNLL PGIFRSCPSS HMFEQGNFTL
201: MNRFGTLVYK GMVFATVGLA AGLVGTAISN GLIMLRKKID PSFETPNKPP PTLLNSLTWA THMGVSANVR YQTLNGAEFL LEKSLPPLVF KTSVIALRVV
301: NNVLGGMSFV TLARMTGSQS VEEEKKIEMS EISEKEKED
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.