Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- cytosol 2
- mitochondrion 1
- nucleus 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra003229.1-P | Field mustard | plastid | 91.81 | 92.31 |
| CDX67635 | Canola | plastid | 91.81 | 92.06 |
| CDY31998 | Canola | plastid | 91.28 | 91.52 |
| AT2G40400.1 | Thale cress | plastid | 78.52 | 79.59 |
| HORVU5Hr1G020100.2 | Barley | cytosol | 21.34 | 67.66 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 66.58 | 66.22 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 65.23 | 65.06 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 64.97 | 64.79 |
| GSMUA_Achr6P35670_001 | Banana | plastid | 60.81 | 63.89 |
| KRG97671 | Soybean | plastid | 64.03 | 63.86 |
| KRH31203 | Soybean | plastid | 63.62 | 63.37 |
| TraesCS3A01G347800.1 | Wheat | plastid | 58.26 | 60.28 |
| TraesCS3D01G341400.1 | Wheat | plastid | 58.12 | 60.14 |
| EES03820 | Sorghum | mitochondrion | 59.19 | 60.08 |
| GSMUA_AchrUn_... | Banana | plastid | 60.4 | 60.0 |
| TraesCS3B01G379700.2 | Wheat | mitochondrion, plastid | 57.99 | 59.92 |
| Zm00001d043023_P002 | Maize | plastid | 59.19 | 59.76 |
| HORVU3Hr1G088220.12 | Barley | mitochondrion, plastid | 57.32 | 58.33 |
| Os01t0826900-01 | Rice | cytosol, endoplasmic reticulum, plastid | 57.85 | 57.7 |
| TraesCS1D01G293100.1 | Wheat | plastid | 56.11 | 56.72 |
| TraesCS1A01G298100.1 | Wheat | plastid | 55.7 | 56.69 |
| Zm00001d010606_P004 | Maize | plastid | 48.72 | 56.45 |
| TraesCS1B01G307600.1 | Wheat | plastid | 55.7 | 56.39 |
| KXG22205 | Sorghum | plastid | 53.29 | 53.5 |
| HORVU1Hr1G070330.11 | Barley | cytosol | 54.9 | 34.08 |
| AT5G12470.1 | Thale cress | plastid | 16.38 | 31.61 |
| AT3G08630.1 | Thale cress | plastid | 11.28 | 24.78 |
| AT3G08640.1 | Thale cress | plastid | 11.14 | 24.63 |
| AT5G22790.1 | Thale cress | plastid | 12.89 | 22.17 |
| AT2G37860.4 | Thale cress | plastid | 12.35 | 21.3 |
| AT5G24690.1 | Thale cress | plastid | 14.23 | 20.35 |
Protein Annotations
| Gene3D:3.40.50.11550 | MapMan:35.1 | EntrezGene:824780 | ProteinID:AEE79485.1 | EMBL:AK227110 | ProteinID:ANM64059.1 |
| ArrayExpress:AT3G56140 | EnsemblPlantsGene:AT3G56140 | RefSeq:AT3G56140 | TAIR:AT3G56140 | RefSeq:AT3G56140-TAIR-G | EnsemblPlants:AT3G56140.1 |
| TAIR:AT3G56140.1 | EMBL:AY093111 | Unigene:At.34962 | EMBL:BT010340 | ProteinID:CAB87413.1 | InterPro:Cofac_haem-bd_dom |
| ncoils:Coil | GO:GO:0003674 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0016020 | GO:GO:0016021 |
| GO:GO:0031969 | RefSeq:NP_001326110.1 | RefSeq:NP_191173.2 | PFAM:PF04187 | PFAM:PF11891 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31620 |
| PANTHER:PTHR31620:SF2 | UniProt:Q8RWG3 | InterPro:RETICULATA-related | SUPFAM:SSF159501 | UniParc:UPI00000A0D74 | SEG:seg |
Description
RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
Coordinates
chr3:+:20829282..20833107
Molecular Weight (calculated)
82256.4 Da
IEP (calculated)
7.403
GRAVY (calculated)
-0.210
Length
745 amino acids
Sequence
(BLAST)
(BLAST)
001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.