Factsheet for Bra003229.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 8
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67635	Canola	plastid	98.79	98.52
AT3G56140.1	Thale cress	plastid	92.31	91.81
Bra017008.1-P	Field mustard	plastid	78.54	78.33
HORVU5Hr1G020100.2	Barley	cytosol	21.59	68.09
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	67.07	66.36
PGSC0003DMT400061517	Potato	mitochondrion	66.26	65.73
Solyc06g050620.2.1	Tomato	mitochondrion	65.99	65.46
KRG97671	Soybean	plastid	63.83	63.32
GSMUA_Achr6P35670_001	Banana	plastid	60.19	62.91
KRH31203	Soybean	plastid	63.16	62.57
TraesCS3A01G347800.1	Wheat	plastid	58.16	59.86
TraesCS3D01G341400.1	Wheat	plastid	58.03	59.72
GSMUA_AchrUn_...	Banana	plastid	60.32	59.6
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	57.89	59.5
EES03820	Sorghum	mitochondrion	58.84	59.4
Zm00001d043023_P002	Maize	plastid	58.57	58.81
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	57.09	57.79
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	57.22	56.76
TraesCS1D01G293100.1	Wheat	plastid	56.41	56.72
TraesCS1A01G298100.1	Wheat	plastid	55.87	56.56
Zm00001d010606_P004	Maize	plastid	48.99	56.45
TraesCS1B01G307600.1	Wheat	plastid	55.74	56.11
KXG22205	Sorghum	plastid	53.04	52.97
HORVU1Hr1G070330.11	Barley	cytosol	54.79	33.83
Bra008880.1-P	Field mustard	cytosol	12.82	33.81
Bra006164.1-P	Field mustard	plastid	14.98	29.37
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	9.18	27.64
Bra029704.1-P	Field mustard	plastid	11.2	25.86
Bra002429.1-P	Field mustard	plastid	12.69	22.38
Bra005154.1-P	Field mustard	plastid	12.42	21.75
Bra000024.1-P	Field mustard	plastid	12.42	21.6
Bra009789.1-P	Field mustard	plastid	14.3	20.04
Bra036522.1-P	Field mustard	plastid	13.9	19.81
Bra006636.1-P	Field mustard	plastid	13.23	16.7

Protein Annotations

EnsemblPlants:Bra003229.1	EnsemblPlants:Bra003229.1-P	EnsemblPlantsGene:Bra003229	Gene3D:3.40.50.11550	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0009507	GO:GO:0009536	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	SEG:seg	SUPFAM:SSF159501
UniParc:UPI00025414C2	UniProt:M4CG96	MapMan:35.1	:	:	:

Description

AT3G56140 (E=0.0) | unknown protein

Coordinates

chrA07:+:12033838..12036873

Molecular Weight (calculated)

81397.2 Da

IEP (calculated)

6.547

GRAVY (calculated)

-0.203

Length

741 amino acids

Sequence
(BLAST)

001: MKLTATNDLF ASQPSLHFPC LSSSSSSSLP RRHGLHLPIN LTRKNNSLSI VALSDSDPPS STAFSRRAIL LAPPLLSAAA SLFLKPSVSL ASEETSSATV
101: TSPAEPATPP PPPPPQSTSV NKEETITSRI YDATAIGEPM AMGKDKKKVW EKLMNARVVY LGEAEQVPTK DDKELELEIV RNLRKRCLES ERQISVALEA
201: FPLDLQEQLN QYMDKRIDGE TLKSYVTDWP AQLWQEYEPL LTYCRDNAVR LIACGTPLKV LRTVQAEGIR GLSKSERKLY TPPAGSGFIS GFSSFSRRST
301: FDMSLPTQIV PFGPSSYLSA QARVVEDHTM SQVILQAVAD GGGTGLLLVV TGASHVEYGS RGTGLPARIS RKFPKKNQVV VLLDPERQYL RREGETPVAD
401: FLWYSAARPC SRNCFDRAEI ARVMNAAGRR RDALPQDIQN GLDLGLVSPE VLQNLFDLEQ YPLISELAQR FQGFRERLLA DPKFLNRLAI EESISITTTL
501: LAQYEKRKEN FFEELDYVIT DTVRGSVVDF FTVWLPAPTL SFLSYADETA GPDSIDALRG LLGSIPDNAF QKSLAGREWN LNLRVAAVIV GGLKLAGVGV
601: VSSFAAVGAS NALNGVRKVI KPELVVAQKP KRSPLLKTAM VYGGFLGTSA NLRYQIIAGL IEHRISDELS SQPLLVNTIS FVVRTLNSYF GTQQWIDLAR
701: STGLQSQKST PASKDVPEAL EETTVECNAT EEENVDKLDN Q

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.