Factsheet for Bra006164.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78491	Canola	plastid	99.47	100.0
CDX70479	Canola	plastid	97.62	98.4
Bra008880.1-P	Field mustard	cytosol	72.49	97.51
AT5G12470.1	Thale cress	plastid	87.3	85.49
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	42.86	75.7
HORVU0Hr1G000510.2	Barley	cytosol	42.06	69.74
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	63.76	66.21
KRH29040	Soybean	endoplasmic reticulum	63.23	64.95
GSMUA_Achr8P08530_001	Banana	plastid	61.64	61.97
Os05t0388600-01	Rice	plasma membrane	61.11	61.11
Zm00001d038085_P001	Maize	plastid	61.9	60.47
PGSC0003DMT400082409	Potato	plastid	65.34	60.1
TraesCS1B01G254100.1	Wheat	unclear	60.58	59.95
Os01t0957200-01	Rice	plastid	61.38	59.64
TraesCS1D01G242600.1	Wheat	golgi	60.58	59.64
Solyc11g065490.1.1	Tomato	plastid	65.08	59.56
TraesCS1A01G242600.1	Wheat	plastid	60.05	59.11
HORVU3Hr1G109880.1	Barley	plastid	58.47	56.81
EES18163	Sorghum	plastid	61.38	56.17
Zm00001d042050_P001	Maize	plastid	56.61	51.57
KXG34151	Sorghum	plastid	53.17	48.09
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	19.84	30.49
Bra029704.1-P	Field mustard	plastid	23.55	27.73
Bra000024.1-P	Field mustard	plastid	26.72	23.71
Bra005154.1-P	Field mustard	plastid	26.45	23.64
Bra002429.1-P	Field mustard	plastid	24.07	21.67
Bra003229.1-P	Field mustard	plastid	29.37	14.98
Bra036522.1-P	Field mustard	plastid	20.37	14.81
Bra017008.1-P	Field mustard	plastid	29.1	14.8
Bra006636.1-P	Field mustard	plastid	22.75	14.65
Bra009789.1-P	Field mustard	plastid	20.37	14.56

Protein Annotations

EnsemblPlants:Bra006164.1	EnsemblPlants:Bra006164.1-P	EnsemblPlantsGene:Bra006164	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11
PFAM:PF11891	SEG:seg	UniParc:UPI000253F9E6	UniProt:M4CPM5	MapMan:35.1	:

Description

AT5G12470 (E=5e-155) | unknown protein

Coordinates

chrA03:-:2312484..2314864

Molecular Weight (calculated)

40591.7 Da

IEP (calculated)

7.115

GRAVY (calculated)

0.121

Length

378 amino acids

Sequence
(BLAST)

001: MAMTSCFFTV PISESNLTRP HLAFSPRLPS SSSFTGVISA KSISFHRRLT ISPVFSASID NGGSDNNNNN NGGDGGGGSG DGDGGSGEDR DRNRSEAMML
101: LAESGTELES LPKDLAAAIE SGRIPGSVIT RFLELQRSAV MRWLMQFAGF RERLLADDLF LAKLAMECGV GVFTKTAAEY ERRRENFFNE LEVVFADVVM
201: AIIADFMLVY LPAPTVSLRP PLALTAGGIS KFFHNCPDNA FQIAISGTSY SLLQRLGAIA RNGAKLFAVG TTSSLVGTAV TNAFIKAKGA VDKTSEGEVE
301: TVPIVSTSVA YGVYMAVSAN LRYQVVAGVV EQRFLEPMLH QHKLALSAMC FAVRTGNTFL GSLLWVDYAR LIGIQKSH

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.