Factsheet for TraesCS1B01G254100.1

Subcellular Localization

min:

: max

Winner_takes_all: unclear

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	unclear
Any Predictor:	mitochondrion, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	mitochondrion
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

unclear: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1A01G242600.1	Wheat	plastid	98.43	97.92
TraesCS1D01G242600.1	Wheat	golgi	98.17	97.66
HORVU0Hr1G000510.2	Barley	cytosol	54.19	90.79
Os05t0388600-01	Rice	plasma membrane	81.94	82.8
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	45.81	81.78
Zm00001d038085_P001	Maize	plastid	80.37	79.33
Bra008880.1-P	Field mustard	cytosol	54.45	74.02
EES18163	Sorghum	plastid	79.84	73.85
GSMUA_Achr8P08530_001	Banana	plastid	67.02	68.09
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	59.95	62.91
CDX97204	Canola	plastid	60.21	61.5
KRH29040	Soybean	endoplasmic reticulum	59.16	61.41
CDX70479	Canola	plastid	60.21	61.33
CDY53965	Canola	plastid	60.47	60.95
CDX78491	Canola	plastid	59.95	60.9
AT5G12470.1	Thale cress	plastid	61.52	60.88
Bra006164.1-P	Field mustard	plastid	59.95	60.58
PGSC0003DMT400082409	Potato	plastid	61.78	57.42
Solyc11g065490.1.1	Tomato	plastid	61.26	56.66
TraesCS2B01G394800.1	Wheat	golgi, plastid	26.7	25.95
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	20.16	22.06
TraesCS2B01G261500.1	Wheat	golgi, unclear	24.35	21.73
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	32.46	17.2
TraesCS7B01G247100.1	Wheat	plastid	22.25	17.07
TraesCS1B01G307600.1	Wheat	plastid	31.94	16.58
TraesCS5B01G110100.1	Wheat	golgi	20.68	14.85

Protein Annotations

EnsemblPlants:TraesCS1B01G254100.1	EnsemblPlantsGene:TraesCS1B01G254100	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8	PFAM:PF11891
SEG:seg	MapMan:35.1	:	:	:	:

Description

No Description!

Coordinates

chr1B:+:448293801..448300250

Molecular Weight (calculated)

40902.5 Da

IEP (calculated)

7.131

GRAVY (calculated)

0.167

Length

382 amino acids

Sequence
(BLAST)

001: MAFSTPNALS ASASGPASPF HLRLQPQPFL RLPALPFHRS LPLHLPSLRL TRPLLPPLPL ASSGGGSNIG SGGGGGDDDL PSGGGGDEDE GEGGDDASVN
101: RREALFVLAQ LGRKLESLPA DMAAAVEGGR LPGEIVRRFA DLEKSPMFRW LLQFGGFRER LLADDLFLAK VAMECGVGIF TKTAAEYERR RENFVKELDF
201: VIADVVMAIV ADFMLVWLPA PTVSLQPALS VNAGAIAKFF HNCPDNAFQV ALAGSSYTFL QRFGAIMRNG AKLFAVGTSA SLIGTGVTNA IIKARKTVNK
301: DDAGEVEDIP IVSTSIAYGV YMAVSSNLRY QVLAGVIEQR MLEPLLHRHK LALSALCFAV RTGNTFLGSL LWVDYAKFIG IQ

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.