CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra008880.1-P	Field mustard	cytosol	74.6	99.29
CDY53965	Canola	plastid	98.13	96.83
CDX78491	Canola	plastid	92.25	91.76
CDX70479	Canola	plastid	90.91	90.67
AT5G12470.1	Thale cress	plastid	86.36	83.68
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	44.12	77.1
HORVU0Hr1G000510.2	Barley	cytosol	43.58	71.49
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	65.24	67.03
KRH29040	Soybean	endoplasmic reticulum	64.71	65.76
GSMUA_Achr8P08530_001	Banana	plastid	62.57	62.23
Os05t0388600-01	Rice	plasma membrane	62.3	61.64
Os01t0957200-01	Rice	plastid	62.83	60.41
TraesCS1B01G254100.1	Wheat	unclear	61.5	60.21
Zm00001d038085_P001	Maize	plastid	62.03	59.95
PGSC0003DMT400082409	Potato	plastid	65.78	59.85
TraesCS1A01G242600.1	Wheat	plastid	61.23	59.64
TraesCS1D01G242600.1	Wheat	golgi	60.96	59.38
Solyc11g065490.1.1	Tomato	plastid	65.24	59.08
HORVU3Hr1G109880.1	Barley	plastid	59.36	57.07
EES18163	Sorghum	plastid	61.76	55.93
Zm00001d042050_P001	Maize	plastid	58.02	52.29
KXG34151	Sorghum	plastid	55.08	49.28
CDY27990	Canola	plastid	24.33	28.35
CDY35990	Canola	plastid	24.33	28.26
CDY22156	Canola	plastid	23.8	26.1
CDY66586	Canola	plastid	23.53	25.73
CDY07766	Canola	plastid	26.47	23.91
CDX74930	Canola	plastid	26.47	23.4
CDX91387	Canola	plastid	26.2	23.11
CDY59488	Canola	plastid	25.4	22.67
CDX92336	Canola	plastid	25.13	22.22
CDY26956	Canola	plastid	24.87	22.09
CDX88782	Canola	plastid	24.06	15.57
CDX93185	Canola	plastid	30.48	15.49
CDX71014	Canola	plastid	24.06	15.23
CDX87117	Canola	plastid	21.39	15.21
CDY52926	Canola	plastid	30.21	15.21
CDX80466	Canola	plastid	21.39	15.18
CDY31998	Canola	plastid	29.95	15.07
CDX67635	Canola	plastid	29.95	15.07
CDX88129	Canola	cytosol	20.86	4.51
CDY67668	Canola	mitochondrion	1.07	2.37

Protein Annotations

EnsemblPlants:CDX97204	EnsemblPlantsGene:GSBRNA2T00104203001	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891
ProteinID:CDX97204	ProteinID:CDX97204.1	SEG:seg	UniParc:UPI0004EDCFCC	MapMan:35.1	:

Description

BnaC09g44210D

Coordinates

chrLK031897:-:1169492..1172062

Molecular Weight (calculated)

40183.0 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.093

Length

374 amino acids

Sequence
(BLAST)

001: MAITSSFFCV PTPNTSSISE SNLSRPHLSF SSSSSSFTGA ISAKSISFHR RLTISPVFSA GGSDNNNNNN GGSGGDGDGD GGDEDRDRNR SEAMMLLAES
101: GTELESLPKD LAAAIESGRI PGSVINRFLE LQRSAVMRWL MQFAGFRERL LADDLFLAKL AMECGVGVFT KTAAEYERRR ENFFNELEVV FADVVMAIIA
201: DFMLVYLPAP TVSLRPPLAL SAGGLSKFFH NCPDNAFQIA LSGTSYSLLQ RFGAIARNGA KLFAVGTTSS LVGTAVTNAF IKAKGAVDKT SEGEVETVPI
301: VSTSVAYGVY MAVSSNLRYQ VLAGVVEQRL LEPLLHQHKL ALSAMCFAVR TGNTFLGSLL WVDYARLIGI QKSH

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.