CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52926	Canola	plastid	96.74	95.83
AT2G40400.1	Thale cress	plastid	86.82	86.94
CDX67635	Canola	plastid	79.21	78.47
CDY31998	Canola	plastid	78.53	77.79
HORVU5Hr1G020100.2	Barley	cytosol	21.06	65.96
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	66.03	64.89
PGSC0003DMT400061517	Potato	mitochondrion	63.45	62.52
Solyc06g050620.2.1	Tomato	mitochondrion	62.77	61.85
KRG97671	Soybean	plastid	62.09	61.18
GSMUA_Achr6P35670_001	Banana	plastid	58.83	61.07
KRH31203	Soybean	plastid	61.55	60.56
TraesCS3D01G341400.1	Wheat	plastid	57.88	59.17
TraesCS3A01G347800.1	Wheat	plastid	57.88	59.17
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	57.88	59.08
EES03820	Sorghum	mitochondrion	57.74	57.9
GSMUA_AchrUn_...	Banana	plastid	58.83	57.73
Zm00001d043023_P002	Maize	plastid	57.61	57.45
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	57.07	57.38
Zm00001d010606_P004	Maize	plastid	49.46	56.61
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	56.93	56.09
TraesCS1D01G293100.1	Wheat	plastid	55.16	55.09
TraesCS1A01G298100.1	Wheat	plastid	54.62	54.92
TraesCS1B01G307600.1	Wheat	plastid	54.76	54.76
KXG22205	Sorghum	plastid	53.94	53.5
HORVU1Hr1G070330.11	Barley	cytosol	54.21	33.25
CDX97204	Canola	plastid	15.49	30.48
CDX70479	Canola	plastid	15.22	29.87
CDY53965	Canola	plastid	15.35	29.82
CDX78491	Canola	plastid	15.08	29.52
CDY35990	Canola	plastid	11.14	25.47
CDY27990	Canola	plastid	10.87	24.92
CDY22156	Canola	plastid	11.01	23.75
CDX74930	Canola	plastid	13.59	23.64
CDY66586	Canola	plastid	10.87	23.39
CDY26956	Canola	plastid	13.32	23.28
CDX91387	Canola	plastid	13.32	23.11
CDX92336	Canola	plastid	13.18	22.93
CDY07766	Canola	plastid	12.5	22.22
CDY59488	Canola	plastid	12.5	21.96
CDX80466	Canola	plastid	14.13	19.73
CDX87117	Canola	plastid	13.72	19.2
CDX88782	Canola	plastid	13.86	17.65
CDX71014	Canola	plastid	13.86	17.26
CDX88129	Canola	cytosol	14.54	6.18
CDY67668	Canola	mitochondrion	0.95	4.14

Protein Annotations

EnsemblPlants:CDX93185	EnsemblPlantsGene:GSBRNA2T00155119001	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	ncoils:Coil
PANTHER:PTHR31620	PANTHER:PTHR31620:SF2	PFAM:PF04187	PFAM:PF11891	ProteinID:CDX93185	ProteinID:CDX93185.1
SEG:seg	SUPFAM:SSF101447	SUPFAM:SSF159501	UniParc:UPI0004EB2349	MapMan:35.1	:

Description

BnaC04g47110D

Coordinates

chrLK031875:-:185137..189399

Molecular Weight (calculated)

81010.0 Da

IEP (calculated)

8.388

GRAVY (calculated)

-0.197

Length

736 amino acids

Sequence
(BLAST)

001: MKPTTNGLFA SQSSPSFTAP RFRGHLPITF TSSNHHHKKN KKNLANVITL SYRVTSSRRA ILVAPPLLAA AISLWPSVSS AAGDISSIVP ADASPEPPAT
101: PPPPPPPPPP PLIEEITSRI YDATALGEPM AVGKDKKRVW EKLLNARIVY LGEAEQVPTR DDKDLELEIV RNLRKRCVES ERQLSLALEA FPVDLQDQLN
201: QYMDKRMDGE ALKSYVSHWP AQRWQEYEPL LTYCRDNSVK LIACGTPLKV LRTVQAEGIR GLSESERRLY TPPAGSGFIS GFTPFSRSSS LNMNPLTQIV
301: PFGPSSYLSA QARVVEDHTM SQVILQAVAD GGGTGLLLVV TGANHVEYGS RGTGLPARVS RKIPKKSQLV VLLDPERQFL RKEGESPVAD FLWYSAARPC
401: SRNCFDRAEI ARVMNAAGRS RDALPQDIQK GLDLGLVSPE ILQNFFDLEQ YPLIAELTQR FQGFRERLLA DPKFLNRLAI EEAISITTTL VAQYEKRKEN
501: FFEELDYVIT DSVRASVVDF FTVWLPAPTL SFLSYADETA RPNSIDALRG LLGSIPDNAF QKSLGGKDWT LNLRIASVIV GGLKLAGVGV VSSFAAVGSS
601: NALYAIRKFI KPELAVSEQT KRSPMLKTAV VYGGYLGTSS NIRYQIIAGL IEHRISDELS SQPLLVNMIS FVVRVANSYY GTQQWIDLAR STGLQAQKGA
701: TASNQIPEAL SQPTVEIVEY STTTTEEATM DDLKNQ

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.