Factsheet for GSMUA_AchrUn_randomP13540_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P35670_001	Banana	plastid	78.4	82.93
HORVU5Hr1G020100.2	Barley	cytosol	24.13	77.02
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	66.13	68.79
TraesCS3A01G347800.1	Wheat	plastid	65.73	68.47
EES03820	Sorghum	mitochondrion	66.93	68.39
TraesCS3D01G341400.1	Wheat	plastid	65.6	68.33
Zm00001d043023_P002	Maize	plastid	67.2	68.29
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	66.8	67.07
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	64.27	65.85
Zm00001d010606_P004	Maize	plastid	55.87	65.16
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	64.4	64.49
TraesCS1A01G298100.1	Wheat	plastid	62.13	63.66
TraesCS1B01G307600.1	Wheat	plastid	62.0	63.18
TraesCS1D01G293100.1	Wheat	plastid	61.73	62.82
KXG22205	Sorghum	plastid	60.8	61.46
KRG97671	Soybean	plastid	61.2	61.45
KRH31203	Soybean	plastid	60.8	60.96
Solyc06g050620.2.1	Tomato	mitochondrion	60.27	60.51
AT3G56140.1	Thale cress	plastid	60.0	60.4
Bra003229.1-P	Field mustard	plastid	59.6	60.32
CDX67635	Canola	plastid	59.73	60.3
CDY31998	Canola	plastid	59.47	60.03
AT2G40400.1	Thale cress	plastid	58.8	60.0
PGSC0003DMT400061517	Potato	mitochondrion	59.6	59.84
CDX93185	Canola	plastid	57.73	58.83
Bra017008.1-P	Field mustard	plastid	57.33	57.87
CDY52926	Canola	plastid	57.33	57.87
HORVU1Hr1G070330.11	Barley	cytosol	61.07	38.17
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	9.73	34.11
GSMUA_Achr8P08530_001	Banana	plastid	16.53	32.98
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.2	23.79
GSMUA_Achr11P...	Banana	plastid	11.33	23.1
GSMUA_Achr8P01660_001	Banana	plastid	10.0	21.19
GSMUA_Achr7P14970_001	Banana	plastid	11.87	20.14
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	11.47	19.63
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	12.4	14.05

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP13540_001	EnsemblPlants:GSMUA_AchrUn_randomT13540_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG13540_001	Gene3D:3.40.50.11550	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187
PFAM:PF11891	SEG:seg	SUPFAM:SSF159501	TMHMM:TMhelix	UniParc:UPI0002966120	UniProt:M0U8W3
MapMan:35.1	:	:	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG13540_001]

Coordinates

chrchrUn_random:+:64387687..64401502

Molecular Weight (calculated)

83042.4 Da

IEP (calculated)

7.494

GRAVY (calculated)

-0.203

Length

750 amino acids

Sequence
(BLAST)

001: MIANSQNIAH LKSSFLARWP SPRRPGDRFA RQFLPASILP RPAAALRRDT DAGDGEVRGM AKRREFLLLP SLAMAVGFLH SVAAAAAAEE KAPEPLPAAA
101: SAPTVVDADK GKEKEKEKEE EGEPEILSRV YDATVIGEPQ AVGKDKRRVW EKLMGARVVY LGEAEMVPDR DDRVLELEIV KNLRNRCLEQ QKTVSVALEA
201: FPIDLQQQLD QFMDGRIDGG SLRSYTFHWP SERWQEYEPL LNYCRDNGVK LVACGTPLKV LRTVQAEGIR GLSKEERKLY APPAGSGFIS GFTSISGRSL
301: IDRISSDPSV LFGPSSYLSA QARVVDEYNM SQSIMKAASD GSSSGMLVVI TGASHVIYGS RGTGIPARIS KKLQKKNQAI ILLDPERQQI RREGEVPIAD
401: FLWYSAAKPC SRNCFDRAEI ARVMNAAGRR REALPQDLQT GLDLGIVSPE ILQNFFDLEK YPLVSELIHR FQGFRERLLA DPKFLHRLAI EEAISITTTL
501: LAQYERRKGR FLEEIDYVLT DTIRGSVVDF FTVWLPAPTL SFLTYADDSS SLESFELLKG LLGSIPDNAF QKSIVGKDWN SIQRFASVIV GGLKLAGVGF
601: ISSIGAGIAS DVLYFVRGTL KPALTVNSRR KRSPIFKSAI VYGCFLGTSA NLRYQIIAGI VEHRLSDYLL SYNSGLLLVN ALSFTVRTIN SYWGTQQWVD
701: LARFTGLQTH NKEAVPDQVV DTPDIPLLEC SSEKVNEVDE SNNQSGDTPT

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.