Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3D01G341400.1 | Wheat | plastid | 98.06 | 98.06 |
| TraesCS3B01G379700.2 | Wheat | mitochondrion, plastid | 96.81 | 96.67 |
| HORVU3Hr1G088220.12 | Barley | mitochondrion, plastid | 95.56 | 93.99 |
| EES03820 | Sorghum | mitochondrion | 81.53 | 79.97 |
| Zm00001d043023_P002 | Maize | plastid | 81.53 | 79.54 |
| Os01t0826900-01 | Rice | cytosol, endoplasmic reticulum, plastid | 80.0 | 77.11 |
| TraesCS1A01G298100.1 | Wheat | plastid | 68.19 | 67.08 |
| GSMUA_Achr6P35670_001 | Banana | plastid | 65.56 | 66.57 |
| GSMUA_AchrUn_... | Banana | plastid | 68.47 | 65.73 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 62.22 | 59.81 |
| AT2G40400.1 | Thale cress | plastid | 60.0 | 58.78 |
| Solyc06g050620.2.1 | Tomato | mitochondrion | 60.83 | 58.63 |
| KRG97671 | Soybean | plastid | 60.56 | 58.37 |
| PGSC0003DMT400061517 | Potato | mitochondrion | 60.56 | 58.37 |
| AT3G56140.1 | Thale cress | plastid | 60.28 | 58.26 |
| Bra003229.1-P | Field mustard | plastid | 59.86 | 58.16 |
| CDX67635 | Canola | plastid | 60.0 | 58.14 |
| CDY31998 | Canola | plastid | 59.86 | 58.01 |
| KRH31203 | Soybean | plastid | 60.14 | 57.89 |
| CDX93185 | Canola | plastid | 59.17 | 57.88 |
| CDY52926 | Canola | plastid | 58.75 | 56.93 |
| Bra017008.1-P | Field mustard | plastid | 58.75 | 56.93 |
| TraesCS1A01G242600.1 | Wheat | plastid | 16.94 | 31.77 |
| TraesCS2A01G377800.1 | Wheat | plastid | 14.31 | 26.28 |
| TraesCS3A01G337100.1 | Wheat | golgi, plastid, unclear | 11.94 | 24.36 |
| TraesCS2A01G234300.1 | Wheat | mitochondrion, plastid | 12.22 | 20.66 |
| TraesCS5A01G110400.1 | Wheat | plastid | 15.14 | 20.45 |
| TraesCS7A01G335500.1 | Wheat | plastid | 13.47 | 19.6 |
Protein Annotations
| EnsemblPlants:TraesCS3A01G347800.1 | EnsemblPlantsGene:TraesCS3A01G347800 | Gene3D:3.40.50.11550 | InterPro:Cofac_haem-bd_dom | InterPro:RETICULATA-related | PANTHER:PTHR31620 |
| PANTHER:PTHR31620:SF6 | PFAM:PF04187 | PFAM:PF11891 | SEG:seg | SUPFAM:SSF159501 | MapMan:35.1 |
Description
No Description!
Coordinates
chr3A:-:596763357..596768597
Molecular Weight (calculated)
78292.7 Da
IEP (calculated)
5.912
GRAVY (calculated)
-0.139
Length
720 amino acids
Sequence
(BLAST)
(BLAST)
001: MLPHAPSRYP GTAKFKPLVP AKPPLSPASS PSSRGSLCAA AASRRDFLLL VPSLAAASTA LQYLPLAASA ADDEKPAPPP PPAPAPAPAE EPNGEAALSR
101: MYDATVIGEP QAVGKDARGR VWEKLMAARV VYLGEAELVP DRDDRLLELE IVRKLAARCA DAGRTLSLSL EAFPCDLQEQ LNQFMDGRID GNSLRLYTSH
201: WAPERWQEYE PLLNYCRDNG IKLIACGTPL EVVRTVQAEG IKGLSKEQRK LYAPPAGSGF ISGFTSISGR SLIDKTSSSR VSPFGPSSYL SAQARVVDDY
301: TMSQIIVKEI STGDPSGMLV VVTGASHVMY GSRGIGVPAR ISKKMQKKKQ VVILLDPERQ GIRREGEIPV ADLLWYSAAK PCSRNCFDRA EIARVMNAAG
401: RRREALPQDI QKGIDLGVVS PEILQNFFDL EKYPVVDELI HRFQGFRERL LADPQFLNRL AIEEGISITT AVLAQYEKRK GRFFEEIDYV LTDTIRGSVV
501: DFFTVWLPAP TISLLSIADN GSGESLELVR GLLGSLPDNA FQKGIVGQNW DMNQRFASVL VGGLKLAGVG FVSSIGAGVA SDVLYAARRV LSPTSIEAER
601: PRAPIWKAAS VYSGFLGTSA NLRYQVIAGL VEHRLGEYLV SYYNQPILAN VLSFVARIIN SYFGTQQWID LARSTGIQTS EEEPPSPDTP ISSEIPVLEC
701: GTAEVPSTDD INKNQSGEQT
101: MYDATVIGEP QAVGKDARGR VWEKLMAARV VYLGEAELVP DRDDRLLELE IVRKLAARCA DAGRTLSLSL EAFPCDLQEQ LNQFMDGRID GNSLRLYTSH
201: WAPERWQEYE PLLNYCRDNG IKLIACGTPL EVVRTVQAEG IKGLSKEQRK LYAPPAGSGF ISGFTSISGR SLIDKTSSSR VSPFGPSSYL SAQARVVDDY
301: TMSQIIVKEI STGDPSGMLV VVTGASHVMY GSRGIGVPAR ISKKMQKKKQ VVILLDPERQ GIRREGEIPV ADLLWYSAAK PCSRNCFDRA EIARVMNAAG
401: RRREALPQDI QKGIDLGVVS PEILQNFFDL EKYPVVDELI HRFQGFRERL LADPQFLNRL AIEEGISITT AVLAQYEKRK GRFFEEIDYV LTDTIRGSVV
501: DFFTVWLPAP TISLLSIADN GSGESLELVR GLLGSLPDNA FQKGIVGQNW DMNQRFASVL VGGLKLAGVG FVSSIGAGVA SDVLYAARRV LSPTSIEAER
601: PRAPIWKAAS VYSGFLGTSA NLRYQVIAGL VEHRLGEYLV SYYNQPILAN VLSFVARIIN SYFGTQQWID LARSTGIQTS EEEPPSPDTP ISSEIPVLEC
701: GTAEVPSTDD INKNQSGEQT
001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ
Arabidopsis Description
RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.