Factsheet for GSMUA_Achr6P35670_001

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
cytosol 1
plastid 3
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	plastid
Predotar:	plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	plastid	82.93	78.4
HORVU5Hr1G020100.2	Barley	cytosol	24.96	75.32
EES03820	Sorghum	mitochondrion	68.12	65.8
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	66.85	65.74
TraesCS3A01G347800.1	Wheat	plastid	66.57	65.56
TraesCS3D01G341400.1	Wheat	plastid	66.43	65.42
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	68.83	65.33
Zm00001d043023_P002	Maize	plastid	67.42	64.77
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	67.14	63.55
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	65.59	63.52
Zm00001d010606_P004	Maize	plastid	56.14	61.9
TraesCS1A01G298100.1	Wheat	plastid	63.75	61.75
KRH31203	Soybean	plastid	64.74	61.36
KRG97671	Soybean	plastid	64.6	61.31
TraesCS1D01G293100.1	Wheat	plastid	63.47	61.06
TraesCS1B01G307600.1	Wheat	plastid	63.33	61.01
AT3G56140.1	Thale cress	plastid	63.89	60.81
Bra003229.1-P	Field mustard	plastid	62.91	60.19
CDX67635	Canola	plastid	63.05	60.16
AT2G40400.1	Thale cress	plastid	62.34	60.14
CDY31998	Canola	plastid	62.76	59.89
Solyc06g050620.2.1	Tomato	mitochondrion	62.34	59.17
KXG22205	Sorghum	plastid	61.78	59.03
PGSC0003DMT400061517	Potato	mitochondrion	62.06	58.9
CDX93185	Canola	plastid	61.07	58.83
CDY52926	Canola	plastid	60.79	58.01
Bra017008.1-P	Field mustard	plastid	60.65	57.87
HORVU1Hr1G070330.11	Barley	cytosol	60.65	35.83
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	10.3	34.11
GSMUA_Achr8P08530_001	Banana	plastid	17.21	32.45
GSMUA_Achr11P...	Banana	plastid	12.69	24.46
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	9.73	23.79
GSMUA_Achr8P01660_001	Banana	plastid	10.72	21.47
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	11.99	19.41
GSMUA_Achr7P14970_001	Banana	plastid	11.99	19.23
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	13.26	14.2

Protein Annotations

EnsemblPlants:GSMUA_Achr6P35670_001	EnsemblPlants:GSMUA_Achr6T35670_001	EnsemblPlantsGene:GSMUA_Achr6G35670_001	Gene3D:3.40.50.11550	InterPro:Cofac_haem-bd_dom	InterPro:RETICULATA-related
PANTHER:PTHR31620	PANTHER:PTHR31620:SF6	PFAM:PF04187	PFAM:PF11891	SEG:seg	SUPFAM:SSF159501
UniParc:UPI000294AA63	UniProt:M0TD10	MapMan:35.1	:	:	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr6G35670_001]

Coordinates

chr6:-:33812474..33823544

Molecular Weight (calculated)

79009.6 Da

IEP (calculated)

7.719

GRAVY (calculated)

-0.207

Length

709 amino acids

Sequence
(BLAST)

001: MAAGFLHSVA AAASATATEE KAPEPVPSAS APPSVVDVEK GNNRKKEKKE EGQPEILSRV YDATVIGEPQ AVGKDKRRVW EKLMGARVVY LGESEMVPDR
101: DDRVLELEIV KNLRNRCLEQ QRTVSLALEA FPIDLQQQID QFMDERIDGG SLRSYTSHWP PERWQEYEPL LNYCRDNGIK LIACGTPLKC YLSQVLLSHS
201: YEGKYICIRS HMVSYLFYVL RTVQAEGIRG LSKNERKLYA PPAGSGFISG FSSISGRSMI DNISSNQSVL FGPSSYLPAQ ARVIDEYTMS QSIMKAINSG
301: SSADMLIVVT GASHVIYGSR GTGVPARISK KLQKKNQVVI LLDPERQQIR REGEVPVADF LWYSAAKPCS RNCFDRAEIA RVMNAAGQRR EALPQDLQKG
401: LDLGIVSPEI LQNFFDLEQY PLISELIHRF QGFRERLLAD PKFLHRLAIE EAISITTTLL AQYERRKGCF LEEIDYVLTD TIRGSVVDFF TVWLPAPTLS
501: FLTYADESSS FEDFEILKGL LGSIPDNAFQ KNVVGKDWTF SHRFASVFFG GLKLAGVGFI SSIGAGVASD VLYFIRKNLR PALSVNSRRK RSPILKSAMI
601: YGSFLGTSAN LRYQIIAGIV EHRLSDYLIS YNNGPLLVNA LSFTVRTINS YWGTQQWVDL ARFTGLQTNK KGAIPDPIAE TPDIPLLECS STKLNNIDES
701: NNQSGDTSP

Best Arabidopsis Sequence Match ( AT3G56140.1 )
(BLAST)

001: MKLTTNDLFA SQPLFHCPCS SSSRPRRRRF YGLHFPINLT SEKNNSLSIV ALSDSDLPSR TAFSRRAFLL APPLLVSAAS LFLKPSVSLA SEESSSATVT
101: SPAESAAPPP PPATTTPSPP PPVNKEETIT SRIYDATAIG EPMAMGKDKK KVWEKLLNAR VVYLGEAEQV PTKDDKELEL EIVRNLRKRC VESERQISVA
201: LEAFPLDLQD QLNQYMDKRM DGETLKSYVT HWPAQRWQEY EPLLSYCRDN SVRLIACGTP LKVLRTVQAE GIRGLSKSER KLYTPPAGSG FISGFSSFSR
301: RSTFDMSLPT QIVPFGPSSY LSAQARVVED HTMSQVILQA VADGGGTGLL LVVTGASHVE YGSRGTGLPA RISRKFPKKN QVVVLLDPER QFLRREGETP
401: VADFLWYSAA RPCSRNCFDR AEIARVMNAA GRRRDALPPD IQNGLDLGLV SPEVLQNLFD LEQYPLISEL TQRFQGFRER LLADPKFLNR LAIEEAISIT
501: TTLIAQYEKR KENFFEEIDY VITDTVRGSV VDFFTVWLPA PTLSFLSYAD ETTGPDSIDA LRGLLGSIPD NAFQKSLAGR EWNLNLRIAS VIVGGLKLAG
601: VGVVSSFAAV GASNALNIAR KVIKPELVVA EKPKRSPLLK TAMVYGGFLG TSANLRYQII AGLIEHRLSD ELSSQPLLVN AISFVVRTLN SYFGTQQWID
701: LARSTGLQTQ KSIPASKEIS EALEEPTVEC DTTTEEESID KLNNQ

Arabidopsis Description

RER6Protein RETICULATA-RELATED 6, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q8RWG3]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.