Factsheet for Bra017008.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52926	Canola	plastid	99.33	99.33
AT2G40400.1	Thale cress	plastid	86.14	87.07
Bra003229.1-P	Field mustard	plastid	78.33	78.54
HORVU5Hr1G020100.2	Barley	cytosol	20.59	65.11
VIT_13s0067g02090.t01	Wine grape	mitochondrion, plastid	65.41	64.89
PGSC0003DMT400061517	Potato	mitochondrion	62.99	62.65
Solyc06g050620.2.1	Tomato	mitochondrion	62.31	61.98
KRG97671	Soybean	plastid	61.37	61.04
GSMUA_Achr6P35670_001	Banana	plastid	57.87	60.65
KRH31203	Soybean	plastid	60.83	60.43
TraesCS3A01G347800.1	Wheat	plastid	56.93	58.75
TraesCS3D01G341400.1	Wheat	plastid	56.93	58.75
TraesCS3B01G379700.2	Wheat	mitochondrion, plastid	56.93	58.67
EES03820	Sorghum	mitochondrion	57.07	57.77
GSMUA_AchrUn_...	Banana	plastid	57.87	57.33
Zm00001d043023_P002	Maize	plastid	56.93	57.32
HORVU3Hr1G088220.12	Barley	mitochondrion, plastid	56.12	56.97
Zm00001d010606_P004	Maize	plastid	48.72	56.3
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	56.12	55.82
TraesCS1D01G293100.1	Wheat	plastid	54.91	55.36
TraesCS1A01G298100.1	Wheat	plastid	54.24	55.05
TraesCS1B01G307600.1	Wheat	plastid	54.37	54.89
KXG22205	Sorghum	plastid	53.16	53.23
Bra008880.1-P	Field mustard	cytosol	12.79	33.81
HORVU1Hr1G070330.11	Barley	cytosol	54.24	33.58
Bra006164.1-P	Field mustard	plastid	14.8	29.1
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	8.61	26.02
Bra029704.1-P	Field mustard	plastid	10.9	25.23
Bra005154.1-P	Field mustard	plastid	13.46	23.64
Bra002429.1-P	Field mustard	plastid	13.06	23.1
Bra000024.1-P	Field mustard	plastid	12.65	22.07
Bra009789.1-P	Field mustard	plastid	13.86	19.47
Bra036522.1-P	Field mustard	plastid	13.59	19.42
Bra006636.1-P	Field mustard	plastid	13.59	17.21

Protein Annotations

Gene3D:3.40.50.11550	MapMan:35.1	EnsemblPlantsGene:Bra017008	EnsemblPlants:Bra017008.1	EnsemblPlants:Bra017008.1-P	InterPro:Cofac_haem-bd_dom
ncoils:Coil	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009507	GO:GO:0009536	GO:GO:0009719	GO:GO:0009741
GO:GO:0009987	GO:GO:0015995	UniProt:M4DKH8	PFAM:PF04187	PFAM:PF11891	PANTHER:PTHR31620
PANTHER:PTHR31620:SF2	InterPro:RETICULATA-related	SUPFAM:SSF159501	UniParc:UPI0002544F39	SEG:seg	:

Description

AT2G40400 (E=1e-315) | unknown protein

Coordinates

chrA04:+:17166564..17170235

Molecular Weight (calculated)

81639.5 Da

IEP (calculated)

7.927

GRAVY (calculated)

-0.176

Length

743 amino acids

Sequence
(BLAST)

001: MKPTTNGLFA SQSSPSFTAP RFRGHLPITF TSSNHHHHHH KNKKNLANVI TLSLPSDVSS SSSRVTSSRR AILVAPPLLA AVISLWPSVS SAAGEISSIV
101: AADASPEPAA PPPPATPPPV EEITSRIYDA TALGEPMAVG KDKKRVWEKL LNARIVYLGE AEQVPTRDDK DLELEIVRNL RKRCVESERQ LSLALEAFPV
201: DLQEQLNQYM DKRMDGEALK SYVSHWPAQR WQEYEPLLTF CRDNSVKLIA CGTPLKVLRT VQAEGIRGLS ESERRLYTPP AGSGFISGFT PFSRNSSLNI
301: NPLTQIVPFG PSSYLSAQAR VVEDHTMSQV ILQAVADGGG TGLLLVVTGA NHVEYGSRGT GLPARVSRKI PKKSQLVVLL DPERQFLRKE GESPVADFLW
401: YSAARPCSRN CFDRAEIARV MNAAGRSRDA LPQDIQKGLD LGLVSPEILQ NLFDLEQYPL IAELTQRFQG FRERLLADPK FLNRLAIEEA ISITTTLVAQ
501: YEKRKENFFE ELDYVITDSV RASVVDFFTV WLPAPTLSFL SYADETARPN SIDALRGLLG SIPDNAFQKS LGGKDWTLNL RIASVIVGGL KLAGVGVVSS
601: FAAVGSSNAL YAIRKFIKPE LAVSEQTKRS PMLKTAVVYG GYLGTSSNIR YQIIAGLIEH RISDELSSQP LLVNMISFVV RVANSYYGTQ QWIDLARSTG
701: LQAQKSVTAS NQIPEALSQP TVEIVEYSTT TTDEATMDDL KNQ

Best Arabidopsis Sequence Match ( AT2G40400.1 )
(BLAST)

001: MKPTTNGGLL ASQSSSSFSF PRFRGQLPII FSANNNQKKK NLPNPNVVTL CLHSHSNVSS SQIAVTRRAI LVAPPLLAAA ASLFLSISSA ASAETSAESV
101: ALPPVATAPP PPPVEKEEAI TSRIYDASVL GEPMAVGKDK KRVWEKLLNA RIVYLGEAEQ VPTRDDKVLE LEIVRNLRKR CIESDRQLSL ALEAFPLDLQ
201: EQLNQYMDKR MDGEVLKSYV SHWPVQRWQE YEPLLSYCRD NGVKLIACGT PLKVLRTVQA EGIRGLSESE RKLYTPPAGS GFISGFTSFS RSSSLNMNPL
301: TQIVPFGPSS YLSAQARVVE DHTMSQVIVQ AVADGGGTGM LVVVTGANHV EYGSRGTGLP ARISRKIPKK SQLVVLLDPE RQFLRKEGES PVADFLWYSA
401: ARPCSRNCFD RAEIARVMNA AGRRRDALPQ DIQKGLDLGL VSPEILQNFF DLEQYPLISE LTQRFQGFRE RLLADPKFLN RLAIEEAISI TTTLVAQYEK
501: RKENFFEELD YVITDSVRAS VVDFFTVWLP APTLSFISYA DETIGPNSID ALRGLLGSIP DNAFQKSLGG QEWTLSLRIA SVIIGGLKLA GVGVVSSFAA
601: VGSSNALYAI RKFIKPELGV GEQAKRSPML KTALVYGGYL GTSSNIRYQI IAGLIEHRIS DELSSQPLLV NMISFVVRVA NSYFGTQQWI DLARSTGLQT
701: QKSVTTSNQI PEVASQSTVE YSTTEEASMD DLKNQ

Arabidopsis Description

RER5Protein RETICULATA-RELATED 5, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9SIY5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.