Factsheet for Bra009789.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 10

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra036522.1-P	Field mustard	plastid	88.28	89.81
AT5G24690.1	Thale cress	plastid	86.96	88.29
VIT_12s0034g01330.t01	Wine grape	cytosol	28.36	71.77
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	58.98	71.23
VIT_12s0034g01370.t01	Wine grape	plastid	69.75	70.83
KRH44019	Soybean	mitochondrion, nucleus, plastid	66.54	67.82
PGSC0003DMT400061143	Potato	plastid	65.97	66.6
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	65.78	66.54
Solyc01g104270.2.1	Tomato	plastid	65.78	66.41
Solyc10g045620.1.1	Tomato	cytosol	41.97	65.49
Os12t0283800-01	Rice	extracellular, plastid	28.36	63.56
Zm00001d041036_P001	Maize	cytosol	40.64	62.5
HORVU7Hr1G082560.2	Barley	mitochondrion	48.77	61.58
Solyc10g045630.1.1	Tomato	plastid	30.43	61.45
EES16982	Sorghum	plastid	57.09	56.13
TraesCS7A01G335500.1	Wheat	plastid	51.98	55.56
TraesCS7B01G247100.1	Wheat	plastid	52.17	55.42
TraesCS5B01G110100.1	Wheat	golgi	55.58	55.26
TraesCS7D01G343200.1	Wheat	plastid	51.98	55.22
TraesCS5A01G110400.1	Wheat	plastid	55.58	55.16
TraesCS5D01G123000.1	Wheat	plastid	55.2	54.68
Zm00001d023791_P002	Maize	plasma membrane	55.2	54.38
HORVU5Hr1G030040.1	Barley	plastid	54.82	52.92
CDX88129	Canola	cytosol	98.87	30.23
Bra008880.1-P	Field mustard	cytosol	11.53	21.71
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	10.02	21.54
Bra029704.1-P	Field mustard	plastid	13.04	21.5
Bra002429.1-P	Field mustard	plastid	16.26	20.48
Bra006164.1-P	Field mustard	plastid	14.56	20.37
Bra005154.1-P	Field mustard	plastid	15.88	19.86
Bra000024.1-P	Field mustard	plastid	15.88	19.72
Os05t0474600-02	Rice	cytosol	14.93	18.2
Bra006636.1-P	Field mustard	plastid	17.01	15.33
Bra003229.1-P	Field mustard	plastid	20.04	14.3
Bra017008.1-P	Field mustard	plastid	19.47	13.86
Os05t0474500-01	Rice	cytosol	0.38	0.39

Protein Annotations

EnsemblPlants:Bra009789.1	EnsemblPlants:Bra009789.1-P	EnsemblPlantsGene:Bra009789	InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2
PFAM:PF11891	SEG:seg	UniParc:UPI000253F262	UniProt:M4CZZ2	MapMan:35.1	:

Description

AT5G24690 (E=4e-201) | INVOLVED IN: biological_process unknown; LOCATED IN: mitochondrion, chloroplast, plastid, chloroplast inner membrane, chloroplast envelope; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; BEST Arabidopsis thaliana protein match is: RER1 (RETICULATA-RELATED 1) (TAIR:AT5G22790.1); Has 251 Blast hits to 242 proteins in 37 species: Archae - 0; Bacteria - 8; Metazoa - 20; Fungi - 4; Plants - 172; Viruses - 3; Other Eukaryotes - 44 (source: NCBI BLink).

Coordinates

chrA06:-:17269567..17271975

Molecular Weight (calculated)

57476.0 Da

IEP (calculated)

9.151

GRAVY (calculated)

-0.178

Length

529 amino acids

Sequence
(BLAST)

001: MSHMAFQSVV APKPLSPLKP SLPIPRPIAT LPCKLRRSCS IRASSSSSLI DSVGDSVSGL ERCLQLQFSG GSGTSSSGSA SPSAQMCPEM KGGKFGSVGA
101: VTLEKGKLDM TQKKVESTPE IATGGGGGDI GKSVNFGGGD GGDDDGDDDD YFDEFDDDDD GDEGGLFRRR MFLAELFDRK FVDAVLNEWQ KTMMDLPAGL
201: RQAYEMGLVS SAQMVKFLAI NARPTTTRFI SRALPQGLSR AFVGRMLADP SFLYRLLLEQ AATVGCSVWW EVKTRKDRIK EEWDLALINV LTVSACNAAA
301: VWLLAPCRSY GNTFRFDLQN TLQKLPNNVF EMSYPLREFD LQKRIHSLFY KAAELSILGV ATGTLQGSLS NFLAAKKKNR VSVTVPSITT NALGYGAFLG
401: LYANMRYQLL CGFERAMSNH FDVIGVALFF GTAMRIMNVQ LGERSRQVWL GVEADPLAQS DDLLAKAYNR PSEEAAAAGK PASRWFISKN AIVSGLLGMK
501: QQDSASDSPP PKARRKRIVR KKVAAPSAS

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.