Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 2
- cytosol 2
- peroxisome 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Os12t0283800-01 | Rice | extracellular, plastid | 65.07 | 57.63 |
| Solyc10g045620.1.1 | Tomato | cytosol | 74.16 | 45.72 |
| VIT_12s0034g01370.t01 | Wine grape | plastid | 98.56 | 39.54 |
| GSMUA_Achr2P05940_001 | Banana | cytosol, extracellular, plasma membrane | 71.77 | 34.25 |
| KRH44019 | Soybean | mitochondrion, nucleus, plastid | 77.03 | 31.02 |
| KRH10440 | Soybean | endoplasmic reticulum, nucleus, plastid | 76.56 | 30.59 |
| Solyc01g104270.2.1 | Tomato | plastid | 75.6 | 30.15 |
| PGSC0003DMT400061143 | Potato | plastid | 75.6 | 30.15 |
| CDX80466 | Canola | plastid | 72.73 | 28.84 |
| AT5G24690.1 | Thale cress | plastid | 71.29 | 28.6 |
| Bra036522.1-P | Field mustard | plastid | 70.81 | 28.46 |
| Bra009789.1-P | Field mustard | plastid | 71.77 | 28.36 |
| CDX87117 | Canola | plastid | 71.29 | 28.33 |
| HORVU7Hr1G082560.2 | Barley | mitochondrion | 55.5 | 27.68 |
| Zm00001d041036_P001 | Maize | cytosol | 44.02 | 26.74 |
| TraesCS5B01G110100.1 | Wheat | golgi | 63.16 | 24.81 |
| TraesCS5A01G110400.1 | Wheat | plastid | 63.16 | 24.77 |
| EES16982 | Sorghum | plastid | 63.64 | 24.72 |
| Zm00001d023791_P002 | Maize | plasma membrane | 63.16 | 24.58 |
| TraesCS5D01G123000.1 | Wheat | plastid | 62.68 | 24.53 |
| TraesCS7A01G335500.1 | Wheat | plastid | 56.46 | 23.84 |
| HORVU5Hr1G030040.1 | Barley | plastid | 62.2 | 23.72 |
| TraesCS7D01G343200.1 | Wheat | plastid | 55.98 | 23.49 |
| TraesCS7B01G247100.1 | Wheat | plastid | 55.02 | 23.09 |
| VIT_08s0056g00560.t01 | Wine grape | plastid | 17.7 | 10.54 |
| VIT_13s0064g00160.t01 | Wine grape | plastid | 16.27 | 8.95 |
| CDX88129 | Canola | cytosol | 71.77 | 8.67 |
| VIT_06s0004g02400.t01 | Wine grape | plastid | 15.79 | 8.59 |
| VIT_08s0007g01250.t01 | Wine grape | cytosol | 15.31 | 8.58 |
| VIT_06s0061g01160.t01 | Wine grape | plastid | 15.31 | 7.82 |
| Os05t0474600-02 | Rice | cytosol | 15.79 | 7.6 |
| VIT_13s0067g02090.t01 | Wine grape | mitochondrion, plastid | 19.14 | 5.34 |
| Solyc10g045630.1.1 | Tomato | plastid | 1.91 | 1.53 |
| Os05t0474500-01 | Rice | cytosol | 0.48 | 0.2 |
Protein Annotations
| EntrezGene:100247994 | wikigene:100247994 | MapMan:35.2 | ProteinID:CCB48716 | ProteinID:CCB48716.1 | UniProt:F6H8X8 |
| EMBL:FN595497 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | EntrezGene:LOC100247994 | wikigene:LOC100247994 |
| PFAM:PF11891 | PANTHER:PTHR31038 | PANTHER:PTHR31038:SF2 | InterPro:RETICULATA-related | TMHMM:TMhelix | UniParc:UPI00015CAE13 |
| ArrayExpress:VIT_12s0034g01330 | EnsemblPlantsGene:VIT_12s0034g01330 | EnsemblPlants:VIT_12s0034g01330.t01 | unigene:Vvi.24463 | RefSeq:XP_002272785 | RefSeq:XP_002272785.1 |
| SEG:seg | : | : | : | : | : |
Description
No Description!
Coordinates
chr12:-:17326991..17329679
Molecular Weight (calculated)
22815.8 Da
IEP (calculated)
10.525
GRAVY (calculated)
-0.026
Length
209 amino acids
Sequence
(BLAST)
(BLAST)
001: MLQKLPNNIF EKSYPLREFD LQKRIHSFFY KAAELCMVGL TAGAAQGALT NFAASKKKDR LSVTIPTVST NALGYGAFLG LYANLRYQLL CGVDRVMINH
101: FDVIGVALFF STALRILNVQ LGETTRLAWL GVEADPLAQS DLLKAYNRPS EGAAESSSKW FISKKAIVSG LGLLGIKQGT GDSVANQESS PPKARRKRVI
201: RKKVTTTSA
101: FDVIGVALFF STALRILNVQ LGETTRLAWL GVEADPLAQS DLLKAYNRPS EGAAESSSKW FISKKAIVSG LGLLGIKQGT GDSVANQESS PPKARRKRVI
201: RKKVTTTSA
001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S
Arabidopsis Description
AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.