Factsheet for Zm00001d023791_P002

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 8

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane
Any Predictor:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

plasma membrane: 23508561
plasma membrane: 27341663

msms PMID: 27341663 doi

P Voothuluru, JC Anderson, RE Sharp, SC Peck

Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES16982	Sorghum	plastid	93.3	93.12
Zm00001d041036_P001	Maize	cytosol	57.91	90.41
Os12t0283800-01	Rice	extracellular, plastid	39.11	88.98
TraesCS5B01G110100.1	Wheat	golgi	79.89	80.64
TraesCS5A01G110400.1	Wheat	plastid	79.7	80.3
TraesCS5D01G123000.1	Wheat	plastid	79.7	80.15
HORVU5Hr1G030040.1	Barley	plastid	78.4	76.82
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	51.96	63.7
VIT_12s0034g01330.t01	Wine grape	cytosol	24.58	63.16
VIT_12s0034g01370.t01	Wine grape	plastid	55.87	57.58
Solyc10g045620.1.1	Tomato	cytosol	36.13	57.23
KRH44019	Soybean	mitochondrion, nucleus, plastid	54.56	56.45
KRH10440	Soybean	endoplasmic reticulum, nucleus, plastid	54.56	56.02
AT5G24690.1	Thale cress	plastid	54.19	55.85
Solyc01g104270.2.1	Tomato	plastid	54.38	55.73
PGSC0003DMT400061143	Potato	plastid	54.19	55.53
CDX80466	Canola	plastid	54.38	55.41
Bra009789.1-P	Field mustard	plastid	54.38	55.2
Bra036522.1-P	Field mustard	plastid	53.26	55.0
CDX87117	Canola	plastid	53.07	54.18
Solyc10g045630.1.1	Tomato	plastid	23.84	48.85
Zm00001d038085_P001	Maize	plastid	16.57	23.0
Zm00001d012539_P001	Maize	extracellular, mitochondrion, plastid	13.97	21.87
Zm00001d043119_P001	Maize	plastid	13.78	21.64
Zm00001d042050_P001	Maize	plastid	15.83	20.48
Zm00001d002980_P001	Maize	plastid	15.08	20.25
Zm00001d019249_P002	Maize	mitochondrion, plastid	15.27	18.47
CDX88129	Canola	cytosol	54.0	16.76
Zm00001d010606_P004	Maize	plastid	17.13	14.31
Zm00001d043023_P002	Maize	plastid	19.37	14.09

Protein Annotations

EnsemblPlants:Zm00001d023791_P002	EnsemblPlants:Zm00001d023791_T002	EnsemblPlantsGene:Zm00001d023791	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:RETICULATA-related	PANTHER:PTHR31038	PANTHER:PTHR31038:SF2	PFAM:PF11891	ProteinID:AQK40027.1	SEG:seg
UniParc:UPI0008451890	UniProt:A0A1D6IVK2	MapMan:35.1	:	:	:

Description

Protein RETICULATA-RELATED 3 chloroplastic

Coordinates

chr10:+:20566347..20591883

Molecular Weight (calculated)

58999.2 Da

IEP (calculated)

9.803

GRAVY (calculated)

-0.222

Length

537 amino acids

Sequence
(BLAST)

001: MASSLAAFHP TLSPDQPITH PHRCPARPNP TTGLLRLLPP CRRARAPALV RLAVSASSTS APLPSADRSE AASSLERCLL LTGAGMETGA MPPASAPPRA
101: APVMKGGRKQ RSTLGAVTLE KAKLDLSQRR KKIMPELATG GGGGDVGKRI GHGGGDGGDD DGDDDDYFDD FDDGEEEEGG LFRRHIVVQE LFNREFVETV
201: LQEWCKTMSN LPAGLHQACE MGLVSSAQMV RYLSIFARPT NTRSFSRALP GWLSKGLVGR TLADPSFPHK MGLEFVATFS SSIWWEMNIR KERFKQEWDL
301: VIVNALTASC CNLMVLGLLA PCRSYGSTSR FEFQNAIEKL PSNIFEKSYP LREFDLPKRI SAFFYKAAEL SLVGFVAGSV QGGMSKVLSV RKERRLSVTI
401: PSISTNALGY GAFLGLYVNL RYQLLCGLDQ YMVKRFDVLG VAIFFSTAAR LLNIQIGEAS RRAWLGEEAD PQYSDRLLRP YKRPVEVYMD QQDSRWFISK
501: DAIVSGLGLL GIKQGGPETT LSKPRRKRVV RKKVASG

Best Arabidopsis Sequence Match ( AT5G24690.1 )
(BLAST)

001: MSHMVFQSVV APKPLSPLKP CLPIPRPLVT LPCKLRRGFV RASSSSFLVD DSVSGLERCL QLPSGVELGT SSSGSFSAST QMCPVMKGKF GSVGAVTLEK
101: GKLDMTQKIS ETSPEIATGG GGGNIGKSIN NGGGDGGDDN GDDDDYFDEF DDGDEGDDDG LFRRRMFLAE IFDRKFVDAV LNEWQKTMMD LPAGLRQAYE
201: MGLVSSAQMV KFLAINARPT TTRMISRALP QGLSRAFVGR MLADPAFLYK LLLEQAATVG CSVWWEVKNR KNRLKEEWDL ALINVLTVSA CNAAAVWLLA
301: PCRSYGNTFR FDLQNTLQKL PNNLFEMSYP LREFDLQKRF HSLFYKAAEL SILGLAAGTL QGSLSNVLAG KKKNRVSVTV PSISTNALGY GAFLGIYANL
401: RYQLLCGFER GVSSHFDVIG VALFFGTALR IMNVQLGEKS RQVWLGVEAD PLAQSDDLLA KAYNRPSEEA VAKPSSKWFI SKNAIVSGLL GKKQEDSVSD
501: SPPPKARRKR IVRKKVAASA S

Arabidopsis Description

AT5g24690/MXC17_8 [Source:UniProtKB/TrEMBL;Acc:Q93W02]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.