Factsheet for Zm00001d012539_P001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, extracellular

Predictor Summary:

plastid 7
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 20408568
mitochondrion: 27297264

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043119_P001	Maize	plastid	88.63	88.89
Os01t0812900-01	Rice	plastid	80.76	79.6
TraesCS3B01G368200.1	Wheat	golgi, plastid, unclear	77.26	75.93
TraesCS3D01G330200.1	Wheat	plastid	78.43	75.77
TraesCS3A01G337100.1	Wheat	golgi, plastid, unclear	77.26	75.07
Bra040052.1-P	Field mustard	golgi, plasma membrane, plastid	45.48	63.41
HORVU3Hr1G079620.1	Barley	mitochondrion, plastid	76.09	62.89
KRH00511	Soybean	endoplasmic reticulum	55.98	55.33
KRH40643	Soybean	mitochondrion	55.98	55.01
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	46.36	54.83
PGSC0003DMT400016786	Potato	plastid	56.27	54.37
Solyc09g031940.1.1	Tomato	plastid	56.27	54.06
CDY35990	Canola	plastid	50.15	53.42
Bra029704.1-P	Field mustard	plastid	49.85	53.27
CDY27990	Canola	plastid	49.85	53.27
VIT_08s0056g00560.t01	Wine grape	plastid	53.64	52.42
AT3G08640.1	Thale cress	plastid	51.31	52.23
CDY22156	Canola	plastid	51.9	52.2
Solyc10g074880.1.1	Tomato	plastid	53.94	51.53
PGSC0003DMT400071250	Potato	plastid	54.52	51.37
CDY66586	Canola	plastid	51.02	51.17
AT3G08630.1	Thale cress	plastid	50.44	51.03
KRH09563	Soybean	plastid	47.52	50.94
GSMUA_Achr11P...	Banana	plastid	53.94	50.27
GSMUA_Achr8P01660_001	Banana	plastid	49.27	47.74
Zm00001d038085_P001	Maize	plastid	25.36	22.48
Zm00001d042050_P001	Maize	plastid	24.78	20.48
Zm00001d002980_P001	Maize	plastid	22.16	19.0
Zm00001d019249_P002	Maize	mitochondrion, plastid	23.32	18.02
Zm00001d041036_P001	Maize	cytosol	14.29	14.24
Zm00001d023791_P002	Maize	plasma membrane	21.87	13.97
Zm00001d043023_P002	Maize	plastid	24.2	11.25
Zm00001d010606_P004	Maize	plastid	19.24	10.26

Protein Annotations

EnsemblPlants:Zm00001d012539_P001	EnsemblPlants:Zm00001d012539_T001	EnsemblPlantsGene:Zm00001d012539	EntrezGene:100276764	GO:GO:0005575	GO:GO:0016020
GO:GO:0016021	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF5	PFAM:PF11891	ProteinID:AQK99824.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0002207A99	UniProt:K7VP16	MapMan:35.1	:

Description

Protein RETICULATA-RELATED 3 chloroplastic

Coordinates

chr8:+:176387457..176388488

Molecular Weight (calculated)

35006.4 Da

IEP (calculated)

10.199

GRAVY (calculated)

0.206

Length

343 amino acids

Sequence
(BLAST)

001: MASTAFAAAK YFPAHLDSSP RIAPRRAAPT ASLSFSPLSA SPSSLLRLRT PCPSGPGGRL PPPPPPPPRS YGGGGGSGGD AANSGGGRRG GGILGLFLAG
101: WAARVAADPQ FPFKVLMEEL VGVTACVLGD MASRPNFGLN ELDFVFSTLV VGSILNFVLM YLLAPTAAAS SAASALPSHM FEPGAFSLGS RVATLVSKGA
201: TFAVVGFAAG LAGTALSNGL MAMRKRMDPA FETPNKPPPT LLNAATWALH MAGSSNLRYQ TLNGVEYMLG KVAPAPVFKA SVVVLRCLNN VLGGVSFVLL
301: ARLTGAQKSD KPATVAEEKD RLIAVGNAAA DAIGEARDGE EGK

Best Arabidopsis Sequence Match ( AT3G08640.1 )
(BLAST)

001: MAAMAAKLQL SAKSDQSSVR LPRVINLSRD PTTRVSFPRN GSVCSLHTNF SSPHLAKPCA GGGGGGSTGN NGGGSGSGGG GGGFGGSGGE ASEESSPWGP
101: IGLFIQGWRS RVAADPQFPF KVLMEEIVGL SACVLGDMAS RPNFGLNELD FVFSTLVVGS ILNFVLMYML APTAATLGSS QTLPGIFRNC PSSHMFEQGS
201: FTVMNRFGTL VYKGMVFASV GLAAGLVGTA ISNGLIMLRK KMDPSFETPN KPPPTVLNSL TWATHMGVSA NARYQTLNGI EFLLAKVLPP LVFKTSVIVL
301: RCANNVAGGM SFVLLARMTG SQSVEEKTEI SEKEKDD

Arabidopsis Description

RER3Protein RETICULATA-RELATED 3, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q9C9Z2]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.