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Maize
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Maize
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • cytosol 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:cytosol, plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:cytosol
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 20089766
extracellular: 20408568
plastid: 22065420
plastid: 23198870
mitochondrion: 27297264
plasma membrane: 27341663
msms PMID: 27297264 doi
D Dahal, KJ Newton, BP Mooney
Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.
msms PMID: 20089766 doi
G Friso, W Majeran, M Huang, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
msms PMID: 23198870 doi
M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.
msms PMID: 27341663 doi
P Voothuluru, JC Anderson, RE Sharp, SC Peck
Bond Life Sciences Center, University of Missouri, Columbia, MO, 65211, USA., Division of Biochemistry, University of Missouri, Columbia, MO, 65211, USA., Division of Plant Sciences, University of Missouri, Columbia, MO, 65211, USA., Interdisciplinary Plant Group, University of Missouri, Columbia, MO, 65211, USA.
msms PMID: 20408568 doi
W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li
Department of Plant Nutrition, China Agricultural University, Beijing, PR China.
msms PMID: 22065420 doi
W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk
Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES18163 Sorghum plastid 93.8 87.89
GSMUA_Achr8P00440_001 Banana cytosol, plasma membrane, plastid 46.25 83.64
Os05t0388600-01 Rice plasma membrane 78.55 80.42
TraesCS1B01G254100.1 Wheat unclear 79.33 80.37
HORVU0Hr1G000510.2 Barley cytosol 47.03 79.82
TraesCS1A01G242600.1 Wheat plastid 79.07 79.69
TraesCS1D01G242600.1 Wheat golgi 78.81 79.43
Bra008880.1-P Field mustard cytosol 54.01 74.38
GSMUA_Achr8P08530_001 Banana plastid 68.22 70.21
KRH24069 Soybean endoplasmic reticulum, mitochondrion 60.47 64.29
CDX70479 Canola plastid 60.47 62.4
CDX78491 Canola plastid 60.47 62.23
KRH29040 Soybean endoplasmic reticulum 59.17 62.23
CDX97204 Canola plastid 59.95 62.03
Bra006164.1-P Field mustard plastid 60.47 61.9
CDY53965 Canola plastid 60.47 61.74
AT5G12470.1 Thale cress plastid 60.98 61.14
Zm00001d042050_P001 Maize plastid 63.31 59.04
PGSC0003DMT400082409 Potato plastid 60.98 57.42
Solyc11g065490.1.1 Tomato plastid 60.47 56.66
Zm00001d012539_P001 Maize extracellular, mitochondrion, plastid 22.48 25.36
Zm00001d043119_P001 Maize plastid 22.22 25.15
Zm00001d002980_P001 Maize plastid 25.06 24.25
Zm00001d019249_P002 Maize mitochondrion, plastid 23.77 20.72
Zm00001d041036_P001 Maize cytosol 16.8 18.9
Zm00001d043023_P002 Maize plastid 32.82 17.21
Zm00001d023791_P002 Maize plasma membrane 23.0 16.57
Zm00001d010606_P004 Maize plastid 27.13 16.33
Protein Annotations
EnsemblPlants:Zm00001d038085_P001EnsemblPlants:Zm00001d038085_T001EnsemblPlantsGene:Zm00001d038085InterPro:RETICULATA-relatedPANTHER:PTHR31620PANTHER:PTHR31620:SF8
PFAM:PF11891ProteinID:AQK85583.1SEG:segUniParc:UPI000220F34FUniProt:A0A1D6M324MapMan:35.1
Description
Protein RETICULATA-RELATED 4 chloroplastic
Coordinates
chr6:+:147225144..147234198
Molecular Weight (calculated)
41218.9 Da
IEP (calculated)
6.516
GRAVY (calculated)
0.179
Length
387 amino acids
Sequence
(BLAST)
001: MASPPPTSLS SPHLIHLRLQ PLPSVPPLHL TTLPFLRSLP LHLHSLRLNR PHLPPLPLAS SGSGSDITGS GGEDDLPPSG GGGGGGGGEG DGEGEGDGSE
101: GDSVNRREAL FVLAQLGRKL ESLPADLAAA VEGGRIPGEI VRRFVDLEAS PVFRWLLQFG GFKERLLADD LFLTKVAIEC GVGIFTKTAA EYEKRRENFV
201: KELDFVIADV VMAIVADFML VWLPAPTVSL QPPLAMNSGA IAKFFYNCPD NAFQVALSGT SYSLLQRVGA ILRNGAKLFA VGTSASLIGT GVTNALIKAR
301: QAASKDFAGE VENIPILSTS VAYGVYMAVS SNLRYQVLAG VIEQRMLEPL LHQHKLVLSA ACFAVRTGNT FLGSLLWIDY ARWIGVQ
Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.