CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	plastid
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX78491	Canola	plastid	98.4	98.14
Bra006164.1-P	Field mustard	plastid	98.4	97.62
CDY53965	Canola	plastid	92.27	91.29
CDX97204	Canola	plastid	90.67	90.91
AT5G12470.1	Thale cress	plastid	88.0	85.49
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	43.47	76.17
HORVU0Hr1G000510.2	Barley	cytosol	42.67	70.18
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	64.8	66.76
KRH29040	Soybean	endoplasmic reticulum	64.27	65.49
GSMUA_Achr8P08530_001	Banana	plastid	62.4	62.23
Os05t0388600-01	Rice	plasma membrane	62.13	61.64
PGSC0003DMT400082409	Potato	plastid	66.4	60.58
Zm00001d038085_P001	Maize	plastid	62.4	60.47
TraesCS1B01G254100.1	Wheat	unclear	61.33	60.21
Solyc11g065490.1.1	Tomato	plastid	66.13	60.05
TraesCS1D01G242600.1	Wheat	golgi	61.33	59.9
Os01t0957200-01	Rice	plastid	61.87	59.64
TraesCS1A01G242600.1	Wheat	plastid	60.8	59.38
EES18163	Sorghum	plastid	62.13	56.42
HORVU3Hr1G109880.1	Barley	plastid	58.4	56.3
Zm00001d042050_P001	Maize	plastid	57.33	51.81
KXG34151	Sorghum	plastid	53.6	48.09
CDY27990	Canola	plastid	24.0	28.04
CDY35990	Canola	plastid	24.0	27.95
CDY22156	Canola	plastid	23.73	26.1
CDY66586	Canola	plastid	23.47	25.73
CDY07766	Canola	plastid	26.67	24.15
CDX74930	Canola	plastid	27.2	24.11
CDX91387	Canola	plastid	26.67	23.58
CDY59488	Canola	plastid	25.87	23.15
CDX92336	Canola	plastid	25.6	22.7
CDY26956	Canola	plastid	25.33	22.57
CDX88782	Canola	plastid	23.47	15.22
CDX93185	Canola	plastid	29.87	15.22
CDX87117	Canola	plastid	21.33	15.21
CDX80466	Canola	plastid	21.33	15.18
CDY31998	Canola	plastid	29.87	15.07
CDX67635	Canola	plastid	29.87	15.07
CDY52926	Canola	plastid	29.6	14.94
CDX71014	Canola	plastid	23.47	14.89
CDX88129	Canola	cytosol	20.8	4.51
CDY67668	Canola	mitochondrion	1.07	2.37

Protein Annotations

EnsemblPlants:CDX70479	EnsemblPlantsGene:GSBRNA2T00140305001	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF11	PFAM:PF11891
ProteinID:CDX70479	ProteinID:CDX70479.1	SEG:seg	UniParc:UPI0004EE3C37	MapMan:35.1	:

Description

BnaC03g05630D

Coordinates

chrLK031791:-:628431..630746

Molecular Weight (calculated)

40337.5 Da

IEP (calculated)

6.790

GRAVY (calculated)

0.150

Length

375 amino acids

Sequence
(BLAST)

001: MAMTSCFFTV PISESNLTRP HLAFSPRLPS SSYFTGVISA KAISFHRRVT ISPVFSASID NGGSDNNNGG GDGGGGSGDG DGDGEDRDRN RSEAMMLLAE
101: SGTELESLPK DLAAAIESGR IPGSVITRFL ELQRSAVMRW LMQFAGFRER LLADDLFLAK LAMECGVGVF TKTAAEYERR RENFFNELEV VFADVVMAII
201: ADFMLVYLPA PTVSLRPPLA LTAGGISKFF HNCPDNAFQI AISGTSYSLL QRLGAIARNG AKLFAVGTTS SLVGTAVTNA FIKAKGAVDK TSEGEVETVP
301: IVSTSVAYGV YMAVSANLRY QVVAGVIEQR FLEPMLHQHK LALSAMCFAV RTGNTFLGSL LWVDYARLIG IQKSH

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.