Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 9
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra008880.1-P | Field mustard | cytosol | 66.06 | 90.75 |
| CDX70479 | Canola | plastid | 85.49 | 88.0 |
| CDX78491 | Canola | plastid | 85.49 | 87.77 |
| Bra006164.1-P | Field mustard | plastid | 85.49 | 87.3 |
| CDX97204 | Canola | plastid | 83.68 | 86.36 |
| CDY53965 | Canola | plastid | 84.2 | 85.75 |
| GSMUA_Achr8P00440_001 | Banana | cytosol, plasma membrane, plastid | 43.01 | 77.57 |
| HORVU0Hr1G000510.2 | Barley | cytosol | 42.49 | 71.93 |
| KRH24069 | Soybean | endoplasmic reticulum, mitochondrion | 63.99 | 67.86 |
| KRH29040 | Soybean | endoplasmic reticulum | 63.47 | 66.58 |
| GSMUA_Achr8P08530_001 | Banana | plastid | 63.21 | 64.89 |
| Os05t0388600-01 | Rice | plasma membrane | 62.18 | 63.49 |
| TraesCS1B01G254100.1 | Wheat | unclear | 60.88 | 61.52 |
| TraesCS1D01G242600.1 | Wheat | golgi | 60.88 | 61.2 |
| Zm00001d038085_P001 | Maize | plastid | 61.14 | 60.98 |
| TraesCS1A01G242600.1 | Wheat | plastid | 60.36 | 60.68 |
| PGSC0003DMT400082409 | Potato | plastid | 63.73 | 59.85 |
| Os01t0957200-01 | Rice | plastid | 59.84 | 59.38 |
| Solyc11g065490.1.1 | Tomato | plastid | 63.47 | 59.32 |
| EES18163 | Sorghum | plastid | 60.88 | 56.9 |
| HORVU3Hr1G109880.1 | Barley | plastid | 56.48 | 56.04 |
| Zm00001d042050_P001 | Maize | plastid | 53.63 | 49.88 |
| KXG34151 | Sorghum | plastid | 50.78 | 46.89 |
| AT3G08640.1 | Thale cress | plastid | 23.06 | 26.41 |
| AT3G08630.1 | Thale cress | plastid | 21.76 | 24.78 |
| AT2G37860.4 | Thale cress | plastid | 25.65 | 22.92 |
| AT5G22790.1 | Thale cress | plastid | 24.87 | 22.17 |
| AT2G40400.1 | Thale cress | plastid | 31.87 | 16.73 |
| AT3G56140.1 | Thale cress | plastid | 31.61 | 16.38 |
| AT5G24690.1 | Thale cress | plastid | 20.47 | 15.16 |
Protein Annotations
| MapMan:35.1 | EntrezGene:831122 | UniProt:A0A178US34 | ProteinID:AED91814.1 | EMBL:AK176209 | EMBL:AK176533 |
| ArrayExpress:AT5G12470 | EnsemblPlantsGene:AT5G12470 | RefSeq:AT5G12470 | TAIR:AT5G12470 | RefSeq:AT5G12470-TAIR-G | EnsemblPlants:AT5G12470.1 |
| TAIR:AT5G12470.1 | EMBL:AY091130 | EMBL:AY114001 | Unigene:At.23837 | EMBL:BT002454 | EMBL:BT008470 |
| ProteinID:CAC42908.1 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0009507 | GO:GO:0009536 | GO:GO:0009706 | GO:GO:0009941 |
| GO:GO:0016020 | GO:GO:0016021 | GO:GO:0031969 | RefSeq:NP_568280.1 | ProteinID:OAO96290.1 | PFAM:PF11891 |
| PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PANTHER:PTHR31620 | PANTHER:PTHR31620:SF11 | UniProt:Q94CJ5 |
| InterPro:RETICULATA-related | UniParc:UPI00000AC48B | SEG:seg | : | : | : |
Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
Coordinates
chr5:-:4044620..4047448
Molecular Weight (calculated)
41325.7 Da
IEP (calculated)
7.502
GRAVY (calculated)
0.104
Length
386 amino acids
Sequence
(BLAST)
(BLAST)
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.