Factsheet for Os05t0388600-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

plastid 8
cytosol 1

Predictors

GFP

MS/MS

Papers

plasma membrane: 18557835
plastid: 21433289
plasma membrane: 27800704

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 18557835 doi

SA Whiteman, TS Nühse, DA Ashford, D Sanders, FJ Maathuis

Department of Biology Area 9, University of York, York YO10 5DD, UK.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P00440_001	Banana	cytosol, plasma membrane, plastid	48.41	85.51
HORVU0Hr1G000510.2	Barley	cytosol	50.79	84.21
TraesCS1B01G254100.1	Wheat	unclear	82.8	81.94
TraesCS1D01G242600.1	Wheat	golgi	82.54	81.25
TraesCS1A01G242600.1	Wheat	plastid	82.28	80.99
Zm00001d038085_P001	Maize	plastid	80.42	78.55
Bra008880.1-P	Field mustard	cytosol	56.35	75.8
EES18163	Sorghum	plastid	80.95	74.09
Os01t0957200-01	Rice	plastid	73.81	71.72
GSMUA_Achr8P08530_001	Banana	plastid	69.58	69.95
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	60.32	62.64
CDX97204	Canola	plastid	61.64	62.3
AT5G12470.1	Thale cress	plastid	63.49	62.18
CDX70479	Canola	plastid	61.64	62.13
CDY53965	Canola	plastid	61.64	61.48
CDX78491	Canola	plastid	61.11	61.44
Bra006164.1-P	Field mustard	plastid	61.11	61.11
KRH29040	Soybean	endoplasmic reticulum	58.99	60.6
PGSC0003DMT400082409	Potato	plastid	61.64	56.69
Solyc11g065490.1.1	Tomato	plastid	61.38	56.17
Os05t0474600-02	Rice	cytosol	30.42	26.5
Os01t0812900-01	Rice	plastid	24.34	26.44
Os04t0524400-01	Rice	plastid	27.25	25.81
Os07t0240300-01	Rice	plastid	24.07	20.54
Os03t0390900-01	Rice	plastid	10.05	18.27
Os12t0283800-01	Rice	extracellular, plastid	11.38	18.22
Os01t0826900-01	Rice	cytosol, endoplasmic reticulum, plastid	33.6	17.0
Os05t0474500-01	Rice	cytosol	0.26	0.2

Protein Annotations

MapMan:35.1	EntrezGene:4338668	ProteinID:AAV31344.1	EMBL:AK105904	ProteinID:BAF17344.1	ProteinID:BAS93827.1
ProteinID:EEE63586.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198
GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0015934
GO:GO:0019538	EnsemblPlantsGene:Os05g0388600	EnsemblPlants:Os05t0388600-01	PFAM:PF11891	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8
UniProt:Q60E58	InterPro:RETICULATA-related	UniParc:UPI00004503F9	RefSeq:XP_015637423.1	SEG:seg	:

Description

Protein of unknown function DUF3411 domain containing protein. (Os05t0388600-01)

Coordinates

chr5:+:18796477..18801851

Molecular Weight (calculated)

40405.8 Da

IEP (calculated)

6.723

GRAVY (calculated)

0.184

Length

378 amino acids

Sequence
(BLAST)

001: MAFPSPNSLS AASHPTSSSS SFHLHLQLQQ PVPHLPFPRS LPLNLPVLRL ARPLLPPAPL ASSGSGGIGI GGGGDDDEGR DNAGGGDGGD DDASVNRREA
101: LFVLAQLGRK LESLPADLAA AIEGGRVPGE IVQRFADLEK SGLFRWLLQF GGFKERLLAD DLFLAKVAME CGVGIFTKTA AEYERRRENF VKELDFVIAD
201: VVMAIVADFM LVWLPAPTVS LQPPLAVNAG SIAKFFHNCP DNAFQVALAG TSYSLLQRVG AIMRNGAKLF AVGTSASLIG TGVTNALIKA RKAVSKDFEG
301: ESEDIPIVST SVAYGVYMAV SSNLRYQILA GVIEQRMLEP LLHHHKLVLS ALCFAVRTGN TFLGSLLWVD YAKWIGIQ

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.