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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 9
  • cytosol 1
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
Zm00001d038085_P001 Maize plastid 87.89 93.8
GSMUA_Achr8P00440_001 Banana cytosol, plasma membrane, plastid 42.86 82.71
Os05t0388600-01 Rice plasma membrane 74.09 80.95
TraesCS1B01G254100.1 Wheat unclear 73.85 79.84
TraesCS1D01G242600.1 Wheat golgi 74.09 79.69
HORVU0Hr1G000510.2 Barley cytosol 43.58 78.95
TraesCS1A01G242600.1 Wheat plastid 73.12 78.65
Bra008880.1-P Field mustard cytosol 50.36 74.02
GSMUA_Achr8P08530_001 Banana plastid 63.2 69.41
KRH24069 Soybean endoplasmic reticulum, mitochondrion 56.9 64.56
KRH29040 Soybean endoplasmic reticulum 55.45 62.23
CDX70479 Canola plastid 56.42 62.13
CDX97204 Canola plastid 55.93 61.76
CDX78491 Canola plastid 56.17 61.7
CDY53965 Canola plastid 56.42 61.48
Bra006164.1-P Field mustard plastid 56.17 61.38
AT5G12470.1 Thale cress plastid 56.9 60.88
PGSC0003DMT400082409 Potato plastid 56.9 57.18
Solyc11g065490.1.1 Tomato plastid 56.42 56.42
KXG34151 Sorghum plastid 54.48 53.83
EES13002 Sorghum mitochondrion, plastid 16.71 27.94
EES11134 Sorghum plastid 25.42 26.45
KXG33587 Sorghum plastid 20.58 24.78
OQU75601 Sorghum cytosol, mitochondrion, plasma membrane 4.12 22.97
EER98239 Sorghum plastid 23.24 22.02
EES03820 Sorghum mitochondrion 32.2 18.12
KXG22205 Sorghum plastid 30.51 16.98
EES16982 Sorghum plastid 22.03 16.91
Protein Annotations
EnsemblPlants:EES18163EnsemblPlantsGene:SORBI_3009G124000EntrezGene:8076842InterPro:RETICULATA-relatedPANTHER:PTHR31620PANTHER:PTHR31620:SF8
PFAM:PF11891ProteinID:EES18163ProteinID:EES18163.1RefSeq:XP_002439733.1SEG:segunigene:Sbi.816
UniParc:UPI0001A88DAFUniProt:C5YXG7MapMan:35.1:::
Description
hypothetical protein
Coordinates
chr9:+:47704146..47712083
Molecular Weight (calculated)
43289.0 Da
IEP (calculated)
5.232
GRAVY (calculated)
0.145
Length
413 amino acids
Sequence
(BLAST)
001: MASPRPTSLS SPAALIHLRL QPLPSIPPLH PTTLPFPRSL PLHLPSLRLN GPHLPPLPLA SSGSGSAITG TGGEADLPPL PLDSSDSGSG ITGTGGEDGL
101: PPSGGGGGGG GGDGEGEGEG DGEGSDDASV NRREALFVLA QLGRKLESLP ADLAAAVEGG RIPAEIVRRF VDLEASPVFR WLLQFGGFKE RLLADDLFLT
201: KVAIECGVGI FTKTAAEYEK RRENFVKELD FVIADVVMAI VADFMLVWLP APTVSLQPPL AVNSGAIAKF FYNCPDNAFQ VALSGTSYSL LQRAGAILRN
301: GAKLFAVGTS ASLVGTGVTN ALIKARQAAS KDFDGEVENL PIVSTSVAYG VYMAVSSNLR YQVLAGVIEQ RMLEPLLHQH KLVLSAASFA VRTGNTFLGS
401: LLWIDYARWV GVQ
Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)
001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH
Arabidopsis Description
RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.