Factsheet for GSMUA_Achr8P00440_001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid, cytosol

Predictor Summary:

cytosol 4
peroxisome 1
plastid 2
golgi 1
nucleus 1
mitochondrion 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU0Hr1G000510.2	Barley	cytosol	77.57	72.81
Bra008880.1-P	Field mustard	cytosol	76.64	58.36
GSMUA_Achr8P08530_001	Banana	plastid	92.52	52.66
Os05t0388600-01	Rice	plasma membrane	85.51	48.41
Zm00001d038085_P001	Maize	plastid	83.64	46.25
TraesCS1B01G254100.1	Wheat	unclear	81.78	45.81
TraesCS1A01G242600.1	Wheat	plastid	81.78	45.57
TraesCS1D01G242600.1	Wheat	golgi	81.78	45.57
Os01t0957200-01	Rice	plastid	82.24	45.24
KRH24069	Soybean	endoplasmic reticulum, mitochondrion	76.17	44.78
CDX97204	Canola	plastid	77.1	44.12
CDX70479	Canola	plastid	76.17	43.47
CDY53965	Canola	plastid	76.64	43.27
KRH29040	Soybean	endoplasmic reticulum	74.3	43.21
CDX78491	Canola	plastid	75.7	43.09
AT5G12470.1	Thale cress	plastid	77.57	43.01
EES18163	Sorghum	plastid	82.71	42.86
Bra006164.1-P	Field mustard	plastid	75.7	42.86
HORVU3Hr1G109880.1	Barley	plastid	77.1	42.42
PGSC0003DMT400082409	Potato	plastid	76.64	39.9
Solyc11g065490.1.1	Tomato	plastid	76.64	39.71
Zm00001d042050_P001	Maize	plastid	71.03	36.63
KXG34151	Sorghum	plastid	66.82	34.21
GSMUA_Achr10P...	Banana	cytosol, nucleus, plastid	27.1	20.0
GSMUA_Achr8P01660_001	Banana	plastid	28.97	17.51
GSMUA_Achr11P...	Banana	plastid	27.57	16.03
GSMUA_Achr7P14970_001	Banana	plastid	30.37	14.71
GSMUA_Achr6P35670_001	Banana	plastid	34.11	10.3
GSMUA_Achr8P13730_001	Banana	extracellular, plasma membrane	30.37	9.82
GSMUA_AchrUn_...	Banana	plastid	34.11	9.73
GSMUA_Achr2P05940_001	Banana	cytosol, extracellular, plasma membrane	18.69	9.13

Protein Annotations

EnsemblPlants:GSMUA_Achr8P00440_001	EnsemblPlants:GSMUA_Achr8T00440_001	EnsemblPlantsGene:GSMUA_Achr8G00440_001	InterPro:RETICULATA-related	PANTHER:PTHR31620	PANTHER:PTHR31620:SF8
PFAM:PF11891	SEG:seg	UniParc:UPI0002952F19	UniProt:M0TLE6	MapMan:35.1	:

Description

expressed protein [Source:GMGC_GENE;Acc:GSMUA_Achr8G00440_001]

Coordinates

chr8:-:350469..360406

Molecular Weight (calculated)

23482.7 Da

IEP (calculated)

8.805

GRAVY (calculated)

0.356

Length

214 amino acids

Sequence
(BLAST)

001: MECGVGIFTK TAAEWERRRE NFIKELDFVI ADVVMAIVAD FMLVWLPAPT VSLRPPLQFN AGPIAKFFYS CPDNAFQVAL AGTSYSLLQR VGAIVRNGSK
101: LFVVGTSASL IGTGITNALI KTRKAVDKEF AGEAEDVPIV STSVAYGVYM AVSSNLRYQV LAGVIEQRIL EPLLHNQKLL LSASCFAVRT GNTFLGSLLW
201: VDYARWVGVQ KIRE

Best Arabidopsis Sequence Match ( AT5G12470.1 )
(BLAST)

001: MAIASCFFCV PTPNTAISES NLTWPHIASF PRLSSSSSFN GVISAKSISF NRRVPITPVL SASSGNGGSD NNGGGLSGGG GGGDGGKNDG DGHGDEDRDR
101: NRNEAMLLLK ESGIELESLP KDLAAAIEAG RIPGSVITRF LELQKSAVMR WLMQFGGFRE RLLADDLFMA KLAMECGVGI FTKTAAEYER RRENFFNELE
201: VVFADVAMAI IADFMLVYLP APTVSLRPPL ALTAGGISKF FHNCPDNAFQ VALSGTSYTL LQRLGAITRN GAKLFAVGTT SSLVGTAITN AFIKARKAVD
301: QNSEGEVETV PIVSTSVAYG VYMAVSSNLR YQIVAGVIEQ RLLEPMLHQH KLALSALCFA VRTGNTFLGS LLWVDYARLI GIQKSH

Arabidopsis Description

RER4Protein RETICULATA-RELATED 4, chloroplastic [Source:UniProtKB/Swiss-Prot;Acc:Q94CJ5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.